Bo9g008330 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo9g008330 T245021_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g008330.1 LOB 12 110

Links

Other LOB family TFs
Other Brassica oleracea TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra039072 Brassica rapa Bra039072 I 1.000
LBD25 Arabidopsis thaliana AT3G27650 I 0.970
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.960
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.960
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.960
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.960
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.949
Bra025294 Brassica rapa Bra025294 I 0.939
Bo7g085860 Brassica oleracea Bo7g085860 I 0.919
Bra033019 Brassica rapa Bra033019 I 0.919
Bo2g144870 Brassica oleracea Bo2g144870 I 0.919
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.869
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.869
MDP0000848210 Malus domestica MDP0000848210 I 0.859
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.859
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.859
TCM_016952 Theobroma cacao TCM_016952 I 0.859
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.859
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.859
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.848
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.848
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.848
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.848
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.848
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.848
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.848
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.848
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.848
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.848
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.848
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.848
29917.m001993 Ricinus communis 29917.m001993 I 0.848
Pm015649 Prunus mume Pm015649 I 0.848
PK26472.1 Cannabis sativa PK26472.1 I 0.848
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.838
Cla017388 Citrullus lanatus Cla017388 I 0.838
Cla010600 Citrullus lanatus Cla010600 I 0.838
Ca_24372 Cicer arietinum Ca_24372 I 0.838
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.838
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.838
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.838
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.838
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.828
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.818
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.818
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.818
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.808
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.808
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.808
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.808
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.798
30147.m013890 Ricinus communis 30147.m013890 I 0.798
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.798
Pm024312 Prunus mume Pm024312 I 0.788
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.788
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.788
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.788
MDP0000254288 Malus domestica MDP0000254288 I 0.788
MDP0000130659 Malus domestica MDP0000130659 I 0.788
Cla019510 Citrullus lanatus Cla019510 I 0.788
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.788
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.788
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.788
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.788
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.788
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.788
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.788
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.788
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.788
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.788
mgf003146m Mimulus guttatus mgf003146m I 0.788
mgf024603m Mimulus guttatus mgf024603m I 0.788
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.788
Ca_08824 Cicer arietinum Ca_08824 I 0.788
OBART01G04470 Oryza barthii OBART01G04470 I 0.788
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.788
LOB Arabidopsis lyrata scaffold_802995.1 I 0.788
OB01G14220 Oryza brachyantha OB01G14220 I 0.788
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.788
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.788
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.788
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.788
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.788
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.788
OS01G0169400 Oryza sativa OS01G0169400 I 0.788
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.788
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.788
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.788
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.788
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.788
Si002632m.g Setaria italica Si002632m.g I 0.788
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.788
Bra038606 Brassica rapa Bra038606 I 0.788
LOB Vitis vinifera VIT_17s0000g09010 I 0.788
TCM_012190 Theobroma cacao TCM_012190 I 0.788
Ca_07463 Cicer arietinum Ca_07463 I 0.788
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.788
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.788
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.788
LOB Arabidopsis thaliana AT5G63090 D 0.788
F775_25656 Aegilops tauschii F775_25656 I 0.788
Bo3g104760 Brassica oleracea Bo3g104760 I 0.788
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.778
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.778
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.778
Bo9g017470 Brassica oleracea Bo9g017470 I 0.778
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.768
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.768
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.768
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.768
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.768
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.758
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.758
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.758
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.758
PK21510.1 Cannabis sativa PK21510.1 I 0.758
Bra035860 Brassica rapa Bra035860 I 0.758
mgf016361m Mimulus guttatus mgf016361m I 0.747
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.737
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.737
Cla003499 Citrullus lanatus Cla003499 I 0.737
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.727
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.707
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.707
Ca_20200 Cicer arietinum Ca_20200 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.707
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.707