Lus10022264.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10022264.g T247038_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.899 0.899
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10022264 LOB 19 117

Links

Other LOB family TFs
Other Linum usitatissimum TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29917.m001993 Ricinus communis 29917.m001993 I 0.970
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.970
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.970
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.960
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.960
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.960
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.960
Pm015649 Prunus mume Pm015649 I 0.960
PK26472.1 Cannabis sativa PK26472.1 I 0.960
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.949
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.949
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.949
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.939
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.939
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.939
Cla010600 Citrullus lanatus Cla010600 I 0.939
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.939
MDP0000848210 Malus domestica MDP0000848210 I 0.939
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.939
Ca_24372 Cicer arietinum Ca_24372 I 0.939
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.939
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.929
TCM_016952 Theobroma cacao TCM_016952 I 0.929
Cla017388 Citrullus lanatus Cla017388 I 0.929
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.919
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.919
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.919
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.919
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.909
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.909
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.909
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.909
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.909
Bo3g104760 Brassica oleracea Bo3g104760 I 0.899
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.899
LOB Arabidopsis thaliana AT5G63090 D 0.899
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.899
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.899
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.899
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.899
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.899
LOB Arabidopsis lyrata scaffold_802995.1 I 0.899
Bra038606 Brassica rapa Bra038606 I 0.899
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.899
TCM_012190 Theobroma cacao TCM_012190 I 0.889
mgf024603m Mimulus guttatus mgf024603m I 0.889
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
MDP0000130659 Malus domestica MDP0000130659 I 0.889
MDP0000254288 Malus domestica MDP0000254288 I 0.889
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.889
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.889
30147.m013890 Ricinus communis 30147.m013890 I 0.889
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.889
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.889
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.889
Cla019510 Citrullus lanatus Cla019510 I 0.889
LOB Vitis vinifera VIT_17s0000g09010 I 0.889
LBD25 Arabidopsis thaliana AT3G27650 I 0.889
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.889
Bo9g017470 Brassica oleracea Bo9g017470 I 0.889
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.889
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.889
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.889
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.879
Si002632m.g Setaria italica Si002632m.g I 0.879
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.879
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.879
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.879
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.879
OB01G14220 Oryza brachyantha OB01G14220 I 0.879
Ca_08824 Cicer arietinum Ca_08824 I 0.879
Pm024312 Prunus mume Pm024312 I 0.879
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.879
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.879
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.879
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.879
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.879
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.879
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.879
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.879
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.879
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.879
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.879
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.879
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.879
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.879
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.869
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.869
OBART01G04470 Oryza barthii OBART01G04470 I 0.869
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.869
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.869
Bra035860 Brassica rapa Bra035860 I 0.869
OS01G0169400 Oryza sativa OS01G0169400 I 0.869
Bo9g008330 Brassica oleracea Bo9g008330 I 0.869
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.869
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.869
Bra039072 Brassica rapa Bra039072 I 0.869
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.869
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.859
F775_25656 Aegilops tauschii F775_25656 I 0.859
Bo7g085860 Brassica oleracea Bo7g085860 I 0.859
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.859
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.859
Ca_07463 Cicer arietinum Ca_07463 I 0.859
Bra025294 Brassica rapa Bra025294 I 0.859
mgf003146m Mimulus guttatus mgf003146m I 0.859
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.859
PK21510.1 Cannabis sativa PK21510.1 I 0.848
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.848
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.848
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.848
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.848
Bra033019 Brassica rapa Bra033019 I 0.838
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.838
Bo2g144870 Brassica oleracea Bo2g144870 I 0.838
mgf016361m Mimulus guttatus mgf016361m I 0.828
Cla003499 Citrullus lanatus Cla003499 I 0.818
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.798
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.798
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
AS2 Vitis vinifera VIT_00s0340g00090 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.737
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
mgf014755m Mimulus guttatus mgf014755m I 0.727
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.727
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.727
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.727
MDP0000273432 Malus domestica MDP0000273432 I 0.727
Cla005851 Citrullus lanatus Cla005851 I 0.727
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.717
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.717
Bo2g051420 Brassica oleracea Bo2g051420 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.717
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.717
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.717
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.717
Bra039733 Brassica rapa Bra039733 I 0.717
29929.m004500 Ricinus communis 29929.m004500 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
LBD6 Arabidopsis thaliana AT1G65620 D 0.717
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.717
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.707
Pm018957 Prunus mume Pm018957 N 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707