SapurV1A.0206s0170 (Salix purpurea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 SapurV1A.0206s0170 T250842_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.950 0.765
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.952 0.586
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.948 0.559
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.947 0.632
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.943 0.870
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.943 0.870
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.943 0.870
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.942 0.710
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.938 0.557
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.925 0.676
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.932 0.594
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.926 0.586
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.920 0.536
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.920 0.536
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.920 0.536
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.861 0.471
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0206s0170.1.p MADF 89 160
SapurV1A.0206s0170.2.p MADF 89 160
SapurV1A.0206s0170.3.p MADF 88 160
SapurV1A.0206s0170.4.p MADF 88 161
SapurV1A.0206s0170.5.p MADF 88 162

Links

Other MADF family TFs
Other Salix purpurea TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra037105 Brassica rapa Bra037105 N 0.000
Carubv10021996m.g Capsella rubella Carubv10021996m.g N 0.000
Carubv10022067m.g Capsella rubella Carubv10022067m.g N 0.000
Cla007529 Citrullus lanatus Cla007529 I 0.000
Cla016376 Citrullus lanatus Cla016376 I 0.000
MDP0000198823 Malus domestica MDP0000198823 I 0.000
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.000
orange1.1g029808m.g Citrus sinensis orange1.1g029808m.g I 0.000
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I 0.000