CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OS04G0486400
(
Oryza sativa
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
OS04G0486400
T249611_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC
GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.950
0.629
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM
KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.945
0.643
GT-1
M10896_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.945
0.643
GT-1
M10897_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.945
0.643
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN
NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.940
0.543
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN
NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.934
0.629
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.924
0.529
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.924
0.529
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.924
0.529
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN
NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.909
0.543
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.907
0.629
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN
NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.900
0.614
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN
NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.897
0.614
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.895
0.543
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV
BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.855
0.443
For this family, TFs with SR scores >
0.812
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02273_2.00
MADF
51
135
RREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARGGGGGGVGGGGAGTGGGNCPAKMACYKEI
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OS04T0486400-01
MADF
61
145
RREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARGGGGGGVGGGGAGTGGGNCPAKMACYKEI
Links
Other
MADF
family TFs
Other
Oryza sativa
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si036121m.g
Setaria italica
Si036121m.g
I
0.970
Si010147m.g
Setaria italica
Si010147m.g
I
0.968
GRMZM2G047370
Zea mays
GRMZM2G047370
I
0.967
MLOC_64014
Hordeum vulgare
MLOC_64014
I
0.966
Pavir.Ga01561
Panicum virgatum
Pavir.Ga01561
I
0.955
OB04G23970
Oryza brachyantha
OB04G23970
I
0.951
evm.TU.supercontig_130.35
Carica papaya
evm.TU.supercontig_130.35
I
0.951
GT-1
Arabidopsis lyrata
scaffold_101505.1
D
0.950
PRUPE_ppa009404mg
Prunus persica
PRUPE_ppa009404mg
I
0.946
Bostr.13671s0104
Boechera stricta
Bostr.13671s0104
I
0.945
Cagra.3501s0157
Capsella grandiflora
Cagra.3501s0157
I
0.945
Carubv10009313m.g
Capsella rubella
Carubv10009313m.g
I
0.945
Bo5g017510
Brassica oleracea
Bo5g017510
I
0.945
Thhalv10007959m.g
Eutrema salsugineum
Thhalv10007959m.g
I
0.945
Bra019721
Brassica rapa
Bra019721
I
0.945
Bra026903
Brassica rapa
Bra026903
I
0.945
GT-1
Arabidopsis thaliana
AT1G13450
D
0.945
PDK_20s1345831g002
Phoenix dactylifera
PDK_20s1345831g002
I
0.940
LjT04G17.70.nc
Lotus japonicus
LjT04G17.70.nc
I
0.940
MTR_3g085960
Medicago truncatula
MTR_3g085960
D
0.940
Cla023054
Citrullus lanatus
Cla023054
I
0.940
Cucsa.394820
Cucumis sativus
Cucsa.394820
I
0.934
MDP0000164819
Malus domestica
MDP0000164819
D
0.934
Pm006885
Prunus mume
Pm006885
I
0.934
AMTR_s00005p00185670
Amborella trichopoda
AMTR_s00005p00185670
I
0.928
SapurV1A.0206s0170
Salix purpurea
SapurV1A.0206s0170
I
0.925
Gorai.009G333800
Gossypium raimondii
Gorai.009G333800
I
0.925
TCM_010751
Theobroma cacao
TCM_010751
I
0.925
Eucgr.J02286
Eucalyptus grandis
Eucgr.J02286
I
0.924
GT-4
Arabidopsis thaliana
AT3G25990
D
0.924
GSMUA_Achr3G19370_001
Musa acuminata
GSMUA_Achr3G19370_001
I
0.918
Bo8g107400
Brassica oleracea
Bo8g107400
I
0.917
POPTR_0008s17980
Populus trichocarpa
POPTR_0008s17980
I
0.917
AMTR_s00055p00209070
Amborella trichopoda
AMTR_s00055p00209070
I
0.917
VIT_14s0171g00450
Vitis vinifera
VIT_14s0171g00450
I
0.911
Gorai.008G163200
Gossypium raimondii
Gorai.008G163200
I
0.909
GLYMA11G37390
Glycine max
GLYMA11G37390
D
0.909
VIT_01s0010g02420
Vitis vinifera
VIT_01s0010g02420
I
0.907
GLYMA18G01360
Glycine max
GLYMA18G01360
I
0.907
PK20543.1
Cannabis sativa
PK20543.1
D
0.907
Thhalv10004359m.g
Eutrema salsugineum
Thhalv10004359m.g
I
0.906
evm.TU.supercontig_1453.1
Carica papaya
evm.TU.supercontig_1453.1
I
0.900
cassava11841.valid.m1
Manihot esculenta
cassava11841.valid.m1
I
0.900
Solyc12g077540.1
Solanum lycopersicum
Solyc12g077540.1
I
0.900
Ca_11315
Cicer arietinum
Ca_11315
I
0.900
SapurV1A.1719s0020
Salix purpurea
SapurV1A.1719s0020
I
0.900
cassava13991.valid.m1
Manihot esculenta
cassava13991.valid.m1
D
0.900
POPTR_0010s06510
Populus trichocarpa
POPTR_0010s06510
I
0.900
Eucgr.B03456
Eucalyptus grandis
Eucgr.B03456
I
0.897
Cagra.6197s0012
Capsella grandiflora
Cagra.6197s0012
I
0.897
29929.m004704
Ricinus communis
29929.m004704
D
0.897
Carubv10017413m.g
Capsella rubella
Carubv10017413m.g
I
0.897
Bostr.0556s0275
Boechera stricta
Bostr.0556s0275
I
0.897
fgenesh2_kg.5__353__AT3G25990.1
Arabidopsis lyrata
fgenesh2_kg.5__353__AT3G25990.1
D
0.895
mgf016368m
Mimulus guttatus
mgf016368m
I
0.894
Aquca_011_00297
Aquilegia coerulea
Aquca_011_00297
I
0.890
Aquca_123_00031
Aquilegia coerulea
Aquca_123_00031
I
0.887
Bo2g138840
Brassica oleracea
Bo2g138840
I
0.887
orange1.1g015940m.g
Citrus sinensis
orange1.1g015940m.g
I
0.887
MDP0000275412
Malus domestica
MDP0000275412
I
0.887
Ciclev10031750m.g
Citrus clementina
Ciclev10031750m.g
I
0.887
Bra036354
Brassica rapa
Bra036354
I
0.887
PRUPE_ppa005942mg
Prunus persica
PRUPE_ppa005942mg
I
0.882
Pm016214
Prunus mume
Pm016214
I
0.882
Lus10036978.g
Linum usitatissimum
Lus10036978.g
I
0.880
Lus10015824.g
Linum usitatissimum
Lus10015824.g
I
0.875
GSMUA_Achr5G17240_001
Musa acuminata
GSMUA_Achr5G17240_001
I
0.873
VIT_17s0000g10420
Vitis vinifera
VIT_17s0000g10420
D
0.855