Bo5g017510 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo5g017510 T247986_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.961 0.743
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.956 0.743
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.956 0.743
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.956 0.743
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.954 0.757
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.952 0.600
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.945 0.743
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.933 0.614
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.933 0.614
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.933 0.614
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.929 0.729
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.927 0.586
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.916 0.643
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.907 0.686
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.896 0.714
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.867 0.471
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g017510.1 MADF 88 168

Links

Other MADF family TFs
Other Brassica oleracea TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra019721 Brassica rapa Bra019721 I 0.971
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.965
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.965
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.965
Bra026903 Brassica rapa Bra026903 I 0.962
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.962
GT-1 Arabidopsis thaliana AT1G13450 D 0.961
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.961
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.954
MDP0000164819 Malus domestica MDP0000164819 D 0.954
Pm006885 Prunus mume Pm006885 I 0.954
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.952
Cla023054 Citrullus lanatus Cla023054 I 0.952
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.952
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.951
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.948
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.947
Si036121m.g Setaria italica Si036121m.g I 0.945
OS04G0486400 Oryza sativa OS04G0486400 D 0.945
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.945
Bo8g107400 Brassica oleracea Bo8g107400 I 0.942
Si010147m.g Setaria italica Si010147m.g I 0.939
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.936
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.935
TCM_010751 Theobroma cacao TCM_010751 I 0.935
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.935
GT-4 Arabidopsis thaliana AT3G25990 D 0.933
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.929
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.929
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.929
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.929
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.929
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.929
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.928
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.927
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.927
Ca_11315 Cicer arietinum Ca_11315 I 0.927
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.927
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.920
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.920
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.920
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.920
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.919
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.919
OB04G23970 Oryza brachyantha OB04G23970 I 0.917
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.916
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.916
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.916
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.916
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.915
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.914
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.911
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.910
Bo2g138840 Brassica oleracea Bo2g138840 I 0.909
Bra036354 Brassica rapa Bra036354 I 0.909
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.907
29929.m004704 Ricinus communis 29929.m004704 D 0.907
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.904
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.900
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.898
PK20543.1 Cannabis sativa PK20543.1 D 0.896
mgf016368m Mimulus guttatus mgf016368m I 0.890
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.890
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.885
Pm016214 Prunus mume Pm016214 I 0.878
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.878
MDP0000275412 Malus domestica MDP0000275412 I 0.873
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.867