Thhalv10004359m.g (Eutrema salsugineum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Thhalv10004359m.g T250867_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.950 0.676
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.949 0.563
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.945 0.704
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.936 0.775
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.936 0.634
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.936 0.634
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.936 0.634
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.936 0.620
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.922 0.549
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.921 0.662
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.916 0.704
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.914 0.662
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.914 0.662
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.914 0.662
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.906 0.634
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.882 0.437
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10004359m MADF 82 155

Links

Other MADF family TFs
Other Eutrema salsugineum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.959
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.958
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.958
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.954
TCM_010751 Theobroma cacao TCM_010751 I 0.954
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.950
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.949
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.949
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.949
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.949
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.948
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.947
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.947
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.946
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.945
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.945
Ca_11315 Cicer arietinum Ca_11315 I 0.945
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.945
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.945
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.939
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.938
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.938
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.938
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.938
GT-1 Arabidopsis thaliana AT1G13450 D 0.936
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.936
PK20543.1 Cannabis sativa PK20543.1 D 0.936
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.936
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.935
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.934
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.931
Bra026903 Brassica rapa Bra026903 I 0.930
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.930
Bo8g107400 Brassica oleracea Bo8g107400 I 0.930
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.929
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.929
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.929
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.925
Cla023054 Citrullus lanatus Cla023054 I 0.924
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.924
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.922
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.922
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.922
29929.m004704 Ricinus communis 29929.m004704 D 0.921
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.916
MDP0000164819 Malus domestica MDP0000164819 D 0.916
Bra019721 Brassica rapa Bra019721 I 0.916
Pm006885 Prunus mume Pm006885 I 0.916
Bo5g017510 Brassica oleracea Bo5g017510 I 0.916
GT-4 Arabidopsis thaliana AT3G25990 D 0.914
Pm016214 Prunus mume Pm016214 I 0.910
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.910
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.909
MDP0000275412 Malus domestica MDP0000275412 I 0.906
OS04G0486400 Oryza sativa OS04G0486400 D 0.906
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.905
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.905
Si010147m.g Setaria italica Si010147m.g I 0.904
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.904
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.904
Si036121m.g Setaria italica Si036121m.g I 0.903
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.900
Bra036354 Brassica rapa Bra036354 I 0.900
Bo2g138840 Brassica oleracea Bo2g138840 I 0.900
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.897
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.882
mgf016368m Mimulus guttatus mgf016368m I 0.881
OB04G23970 Oryza brachyantha OB04G23970 I 0.873