Solyc12g077540.1 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc12g077540.1 T249898_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.925 0.597
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.918 0.821
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.918 0.821
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.918 0.821
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.915 0.731
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.915 0.552
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.915 0.642
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.914 0.567
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.907 0.552
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.907 0.552
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.906 0.567
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.906 0.567
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.906 0.567
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.900 0.627
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.882 0.522
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.821 0.418
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g077540.1.1 MADF 62 133

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.956
mgf016368m Mimulus guttatus mgf016368m I 0.943
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.937
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.935
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.935
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.934
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.930
PK20543.1 Cannabis sativa PK20543.1 D 0.925
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.924
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.921
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.918
GT-1 Arabidopsis thaliana AT1G13450 D 0.918
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.917
TCM_010751 Theobroma cacao TCM_010751 I 0.917
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.917
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.916
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.915
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.915
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.915
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.915
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.915
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.915
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.915
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.914
Cla023054 Citrullus lanatus Cla023054 I 0.914
Pm016214 Prunus mume Pm016214 I 0.914
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.914
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.914
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.914
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.914
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.913
MDP0000275412 Malus domestica MDP0000275412 I 0.910
Bo8g107400 Brassica oleracea Bo8g107400 I 0.908
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.908
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.908
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.908
Bra026903 Brassica rapa Bra026903 I 0.908
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.908
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.907
MDP0000164819 Malus domestica MDP0000164819 D 0.907
Pm006885 Prunus mume Pm006885 I 0.907
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.907
Ca_11315 Cicer arietinum Ca_11315 I 0.907
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.907
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.907
GT-4 Arabidopsis thaliana AT3G25990 D 0.906
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.905
OB04G23970 Oryza brachyantha OB04G23970 I 0.904
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.901
OS04G0486400 Oryza sativa OS04G0486400 D 0.900
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.900
Si010147m.g Setaria italica Si010147m.g I 0.900
Si036121m.g Setaria italica Si036121m.g I 0.899
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.895
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.895
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.895
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.894
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.894
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.893
Bra036354 Brassica rapa Bra036354 I 0.891
Bo2g138840 Brassica oleracea Bo2g138840 I 0.891
Bo5g017510 Brassica oleracea Bo5g017510 I 0.890
Bra019721 Brassica rapa Bra019721 I 0.890
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.890
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.890
29929.m004704 Ricinus communis 29929.m004704 D 0.882
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.870
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.821