Lus10015824.g (Linum usitatissimum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Lus10015824.g T250736_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.963 0.958
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.959 0.761
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.958 0.845
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.947 0.901
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.944 0.915
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.940 0.634
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.936 0.732
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.923 0.549
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.923 0.549
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.923 0.549
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.923 0.535
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.920 0.789
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.920 0.789
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.920 0.789
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.875 0.549
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.836 0.394
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015824 MADF 88 180

Links

Other MADF family TFs
Other Linum usitatissimum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.970
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.963
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.963
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.963
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.963
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.963
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.959
Ca_11315 Cicer arietinum Ca_11315 I 0.959
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.959
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.959
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.959
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.958
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.958
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.956
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.954
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.951
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.951
TCM_010751 Theobroma cacao TCM_010751 I 0.951
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.949
29929.m004704 Ricinus communis 29929.m004704 D 0.947
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.944
Pm006885 Prunus mume Pm006885 I 0.944
MDP0000164819 Malus domestica MDP0000164819 D 0.944
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.944
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.944
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.942
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.942
PK20543.1 Cannabis sativa PK20543.1 D 0.940
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.939
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.938
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.937
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.936
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.936
Cla023054 Citrullus lanatus Cla023054 I 0.936
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.936
Bo8g107400 Brassica oleracea Bo8g107400 I 0.932
Bra026903 Brassica rapa Bra026903 I 0.932
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.931
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.926
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.926
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.926
GT-1 Arabidopsis thaliana AT1G13450 D 0.926
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.926
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.925
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.925
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.923
GT-4 Arabidopsis thaliana AT3G25990 D 0.920
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.920
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.915
Bra019721 Brassica rapa Bra019721 I 0.911
Bo5g017510 Brassica oleracea Bo5g017510 I 0.911
Pm016214 Prunus mume Pm016214 I 0.909
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.909
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.906
MDP0000275412 Malus domestica MDP0000275412 I 0.905
Bra036354 Brassica rapa Bra036354 I 0.900
Bo2g138840 Brassica oleracea Bo2g138840 I 0.900
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.899
mgf016368m Mimulus guttatus mgf016368m I 0.895
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.895
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.880
OS04G0486400 Oryza sativa OS04G0486400 D 0.875
Si010147m.g Setaria italica Si010147m.g I 0.875
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.875
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.875
Si036121m.g Setaria italica Si036121m.g I 0.873
OB04G23970 Oryza brachyantha OB04G23970 I 0.859
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.836