29929.m004704 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 29929.m004704 T250448_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
29929.m004704
M02278_2.00		 Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.954 0.932
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.951 0.808
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.948 0.740
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.947 0.658
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.930 0.890
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.921 0.726
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.919 0.767
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.919 0.767
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.919 0.767
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.914 0.534
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.914 0.534
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.914 0.534
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.905 0.507
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.897 0.589
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.812 0.370
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02278_2.00 MADF 51 137

DNA Binding Domains

Protein ID Domain From To Sequence
29929.m004704 MADF 96 182

Links

Other MADF family TFs
Other Ricinus communis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.963
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.962
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.954
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.954
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.954
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.954
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.954
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.952
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.951
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.948
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.948
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.948
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.948
Ca_11315 Cicer arietinum Ca_11315 I 0.948
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.948
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.947
PK20543.1 Cannabis sativa PK20543.1 D 0.947
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.945
TCM_010751 Theobroma cacao TCM_010751 I 0.938
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.938
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.938
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.938
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.936
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.933
MDP0000164819 Malus domestica MDP0000164819 D 0.930
Pm006885 Prunus mume Pm006885 I 0.930
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.930
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.930
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.928
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.924
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.923
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.921
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.921
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.921
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.921
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.921
Cla023054 Citrullus lanatus Cla023054 I 0.921
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.921
GT-4 Arabidopsis thaliana AT3G25990 D 0.919
Bra036354 Brassica rapa Bra036354 I 0.919
Bo2g138840 Brassica oleracea Bo2g138840 I 0.919
GT-1 Arabidopsis thaliana AT1G13450 D 0.917
Bra026903 Brassica rapa Bra026903 I 0.915
Bo8g107400 Brassica oleracea Bo8g107400 I 0.915
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.910
Pm016214 Prunus mume Pm016214 I 0.910
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.908
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.908
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.908
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.908
Si010147m.g Setaria italica Si010147m.g I 0.907
Bra019721 Brassica rapa Bra019721 I 0.907
Bo5g017510 Brassica oleracea Bo5g017510 I 0.907
MDP0000275412 Malus domestica MDP0000275412 I 0.906
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.905
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.901
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.901
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.897
OS04G0486400 Oryza sativa OS04G0486400 D 0.897
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.897
Si036121m.g Setaria italica Si036121m.g I 0.896
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.895
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.894
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.892
mgf016368m Mimulus guttatus mgf016368m I 0.891
OB04G23970 Oryza brachyantha OB04G23970 I 0.884
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.882
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.812