CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_6DL_609A01BD5
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_6DL_609A01BD5
T256594_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MAD55_ORYSJ
M10962_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS55_01
0.708
0.708
Q4U0F1_WHEAT
M10978_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT2_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_6DL_609A01BD5.1
MADS box
20
67
RIESEEARQVCFSKRRAGLFKKVSELAVLCGAEVAAVVFSPAGKAFSF
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_43210
Aegilops tauschii
F775_43210
I
1.000
F775_04223
Aegilops tauschii
F775_04223
I
0.958
TRAES3BF106100060CFD_g
Triticum aestivum
TRAES3BF106100060CFD_g
I
0.958
GRMZM5G891280
Zea mays
GRMZM5G891280
I
0.896
AC234185.1_FG006
Zea mays
AC234185.1_FG006
I
0.896
Si019951m.g
Setaria italica
Si019951m.g
I
0.896
Pavir.J11717
Panicum virgatum
Pavir.J11717
I
0.896
Pavir.J00788
Panicum virgatum
Pavir.J00788
I
0.896
Sb09g029120
Sorghum bicolor
Sb09g029120
I
0.896
OPUNC09G00580
Oryza punctata
OPUNC09G00580
N
0.875
OBART09G00850
Oryza barthii
OBART09G00850
N
0.854
OGLUM01G50090
Oryza glumaepatula
OGLUM01G50090
N
0.854
ONIVA09G00960
Oryza nivara
ONIVA09G00960
N
0.854
OBART01G45740
Oryza barthii
OBART01G45740
N
0.854
ORGLA01G0394900
Oryza glaberrima
ORGLA01G0394900
N
0.854
OPUNC01G44670
Oryza punctata
OPUNC01G44670
N
0.854
ORUFI09G00870
Oryza rufipogon
ORUFI09G00870
N
0.854
OGLUM09G01140
Oryza glumaepatula
OGLUM09G01140
N
0.854
OMERI09G00900
Oryza meridionalis
OMERI09G00900
N
0.854
ONIVA01G52000
Oryza nivara
ONIVA01G52000
N
0.854
OS09G0116800
Oryza sativa
OS09G0116800
N
0.854
OLONG_027660
Oryza longistaminata
OLONG_027660
N
0.854
OLONG_018222
Oryza longistaminata
OLONG_018222
N
0.854
OS01G0975800
Oryza sativa
OS01G0975800
N
0.854
ORUFI01G49230
Oryza rufipogon
ORUFI01G49230
N
0.854
BGIOSGA005284
Oryza indica
BGIOSGA005284
N
0.854
ORGLA09G0007400
Oryza glaberrima
ORGLA09G0007400
N
0.854
BGIOSGA030217
Oryza indica
BGIOSGA030217
N
0.854
GSMUA_Achr5G26530_001
Musa acuminata
GSMUA_Achr5G26530_001
I
0.854
GSMUA_Achr8G07230_001
Musa acuminata
GSMUA_Achr8G07230_001
I
0.854
LPERR01G40130
Leersia perrieri
LPERR01G40130
N
0.833
Pavir.Fb00782
Panicum virgatum
Pavir.Fb00782
I
0.828
LPERR02G10390
Leersia perrieri
LPERR02G10390
N
0.812
BRADI4G39420
Brachypodium distachyon
BRADI4G39420
N
0.812
OB01G55160
Oryza brachyantha
OB01G55160
N
0.812
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.812
Pavir.Bb00804
Panicum virgatum
Pavir.Bb00804
N
0.792
Pavir.Ba03370
Panicum virgatum
Pavir.Ba03370
N
0.792
BRADI1G20090
Brachypodium distachyon
BRADI1G20090
N
0.771
BRADI2G26320
Brachypodium distachyon
BRADI2G26320
N
0.750
Sb07g007306
Sorghum bicolor
Sb07g007306
N
0.750
GRMZM2G459864
Zea mays
GRMZM2G459864
N
0.750
F775_23542
Aegilops tauschii
F775_23542
N
0.750
Sb07g007373
Sorghum bicolor
Sb07g007373
N
0.750
F775_23176
Aegilops tauschii
F775_23176
N
0.750
F775_21960
Aegilops tauschii
F775_21960
N
0.733
ORUFI06G14240
Oryza rufipogon
ORUFI06G14240
N
0.729
Aquca_015_00243
Aquilegia coerulea
Aquca_015_00243
N
0.729
Pavir.Bb00803
Panicum virgatum
Pavir.Bb00803
N
0.729
AMTR_s00025p00244880
Amborella trichopoda
AMTR_s00025p00244880
N
0.729
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.729
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.729
Si038960m.g
Setaria italica
Si038960m.g
N
0.729
Aquca_015_00242
Aquilegia coerulea
Aquca_015_00242
N
0.729
BGIOSGA022830
Oryza indica
BGIOSGA022830
N
0.729
ORGLA06G0273400
Oryza glaberrima
ORGLA06G0273400
N
0.729
MLOC_55767
Hordeum vulgare
MLOC_55767
N
0.729
Bra026764
Brassica rapa
Bra026764
N
0.729
F775_52426
Aegilops tauschii
F775_52426
N
0.729
GSMUA_Achr8G09250_001
Musa acuminata
GSMUA_Achr8G09250_001
I
0.729
ONIVA06G15960
Oryza nivara
ONIVA06G15960
N
0.729
OLONG_015132
Oryza longistaminata
OLONG_015132
N
0.729
OPUNC09G08220
Oryza punctata
OPUNC09G08220
N
0.729
OPUNC06G12720
Oryza punctata
OPUNC06G12720
N
0.729
OB06G21580
Oryza brachyantha
OB06G21580
N
0.729
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
OB06G16920
Oryza brachyantha
OB06G16920
I
0.708
Aquca_040_00096
Aquilegia coerulea
Aquca_040_00096
N
0.708
gw1.88.220.1
Physcomitrella patens
gw1.88.220.1
N
0.708
TRIUR3_03219
Triticum urartu
TRIUR3_03219
I
0.708
TRIUR3_22433
Triticum urartu
TRIUR3_22433
N
0.708
gw1.81.151.1
Physcomitrella patens
gw1.81.151.1
N
0.708
OB08G28340
Oryza brachyantha
OB08G28340
I
0.708
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.708
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.708
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.708
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.708
BRADI3G18670
Brachypodium distachyon
BRADI3G18670
N
0.708
GRMZM2G472100
Zea mays
GRMZM2G472100
N
0.708
MAD55_ORYSJ
Oryza sativa
MAD55_ORYSJ
D
0.708
BGIOSGA007600
Oryza indica
BGIOSGA007600
N
0.708
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.708
OBART06G13310
Oryza barthii
OBART06G13310
N
0.708
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.708
OMERI06G08590
Oryza meridionalis
OMERI06G08590
I
0.708
Q4U0F1_WHEAT
Triticum aestivum
Q4U0F1_WHEAT
D
0.708
Sb02g006700
Sorghum bicolor
Sb02g006700
N
0.708
Sb06g015640
Sorghum bicolor
Sb06g015640
N
0.708
OS06G0217300
Oryza sativa
OS06G0217300
I
0.708
ONIVA02G05120
Oryza nivara
ONIVA02G05120
N
0.708
ORGLA06G0069900
Oryza glaberrima
ORGLA06G0069900
I
0.708
BRADI1G45807
Brachypodium distachyon
BRADI1G45807
I
0.708
ORUFI02G05030
Oryza rufipogon
ORUFI02G05030
N
0.708
OPUNC06G07080
Oryza punctata
OPUNC06G07080
I
0.708
OGLUM06G14250
Oryza glumaepatula
OGLUM06G14250
N
0.708
Sb0836s002010
Sorghum bicolor
Sb0836s002010
N
0.708
BGIOSGA021662
Oryza indica
BGIOSGA021662
I
0.708
Si032189m.g
Setaria italica
Si032189m.g
N
0.708
ORGLA02G0045500
Oryza glaberrima
ORGLA02G0045500
N
0.708
TRAES3BF009000010CFD_g
Triticum aestivum
TRAES3BF009000010CFD_g
I
0.708
SELMODRAFT_450777
Selaginella moellendorffii
SELMODRAFT_450777
N
0.708
OGLUM02G04740
Oryza glumaepatula
OGLUM02G04740
N
0.708
SELMODRAFT_450776
Selaginella moellendorffii
SELMODRAFT_450776
N
0.708
SELMODRAFT_450772
Selaginella moellendorffii
SELMODRAFT_450772
N
0.708
SELMODRAFT_450775
Selaginella moellendorffii
SELMODRAFT_450775
N
0.708
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707
Traes_7BS_4D5DE99CC
Triticum aestivum
Traes_7BS_4D5DE99CC
I
0.700