chr5.LjT39E05.40.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr5.LjT39E05.40.nd T259344_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.LjT39E05.40.nd MADS box 21 68

Links

Other MADS box family TFs
Other Lotus japonicus TFs

245 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000221590 Malus domestica MDP0000221590 N 0.833
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.812
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.812
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.812
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.812
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.812
Ca_04659 Cicer arietinum Ca_04659 N 0.812
Pm021071 Prunus mume Pm021071 N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.812
Ca_04665 Cicer arietinum Ca_04665 N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.812
29613.m000367 Ricinus communis 29613.m000367 N 0.812
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.812
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
TCM_006323 Theobroma cacao TCM_006323 N 0.792
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.792
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
AGL62 Arabidopsis thaliana AT5G60440 I 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.792
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.792
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.792
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.792
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.792
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.792
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.792
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.771
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.771
Pm021017 Prunus mume Pm021017 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.771
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.771
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.771
Ca_26354 Cicer arietinum Ca_26354 N 0.771
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.771
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.771
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
Ca_07607 Cicer arietinum Ca_07607 N 0.771
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.771
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.771
Bra038225 Brassica rapa Bra038225 N 0.771
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
Bo4g157220 Brassica oleracea Bo4g157220 N 0.750
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.750
Bo9g142570 Brassica oleracea Bo9g142570 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.750
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
Bra032057 Brassica rapa Bra032057 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
Bra026764 Brassica rapa Bra026764 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.750
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.750
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
Ca_04662 Cicer arietinum Ca_04662 N 0.750
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
Pm030655 Prunus mume Pm030655 I 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
30099.m001671 Ricinus communis 30099.m001671 N 0.750
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.750
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.750
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.729
VIT_07s0005g06590 Vitis vinifera VIT_07s0005g06590 N 0.729
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
MDP0000274606 Malus domestica MDP0000274606 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.729
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
BRADI2G26320 Brachypodium distachyon BRADI2G26320 N 0.729
BRADI1G27900 Brachypodium distachyon BRADI1G27900 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
AGL23 Arabidopsis thaliana AT1G65360 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.729
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
F775_04223 Aegilops tauschii F775_04223 I 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
TCM_000878 Theobroma cacao TCM_000878 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
TCM_029518 Theobroma cacao TCM_029518 I 0.708
28830.m000229 Ricinus communis 28830.m000229 N 0.708
Pm002317 Prunus mume Pm002317 N 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
VIT_00s0386g00010 Vitis vinifera VIT_00s0386g00010 N 0.708
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.708
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.708
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
GLYMA10G10295 Glycine max GLYMA10G10295 N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
F775_43210 Aegilops tauschii F775_43210 I 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705