Gorai.005G263100 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.005G263100 T258411_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G263100.1 MADS box 15 62

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.917
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.917
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.917
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.917
Cla006571 Citrullus lanatus Cla006571 N 0.896
TCM_006323 Theobroma cacao TCM_006323 N 0.896
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.896
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.896
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.896
MDP0000434703 Malus domestica MDP0000434703 I 0.896
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.896
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
MDP0000278770 Malus domestica MDP0000278770 N 0.875
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.875
MDP0000233925 Malus domestica MDP0000233925 N 0.875
Pm021071 Prunus mume Pm021071 N 0.875
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.875
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.875
30099.m001672 Ricinus communis 30099.m001672 N 0.875
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.875
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.875
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.875
AGL62 Arabidopsis thaliana AT5G60440 I 0.875
Bra022434 Brassica rapa Bra022434 N 0.875
Bo1g112460 Brassica oleracea Bo1g112460 N 0.875
Ca_04660 Cicer arietinum Ca_04660 N 0.854
Pm021070 Prunus mume Pm021070 N 0.854
Pm021018 Prunus mume Pm021018 N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
Ca_04659 Cicer arietinum Ca_04659 N 0.854
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.854
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.854
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.854
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.854
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.854
Bo5g113750 Brassica oleracea Bo5g113750 N 0.854
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.854
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
Bra038225 Brassica rapa Bra038225 N 0.854
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
Bo4g165540 Brassica oleracea Bo4g165540 N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.833
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.833
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
Ca_04665 Cicer arietinum Ca_04665 N 0.833
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.833
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
MDP0000168914 Malus domestica MDP0000168914 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.833
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.812
mgf024307m Mimulus guttatus mgf024307m N 0.812
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.812
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.812
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.812
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.812
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.812
mgf018529m Mimulus guttatus mgf018529m N 0.812
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.812
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.812
Ca_04661 Cicer arietinum Ca_04661 N 0.812
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.812
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.792
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.792
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.792
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.792
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.792
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.792
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.792
29613.m000367 Ricinus communis 29613.m000367 N 0.792
Bo9g142570 Brassica oleracea Bo9g142570 N 0.792
Bra011938 Brassica rapa Bra011938 N 0.792
Pm016629 Prunus mume Pm016629 N 0.792
Ca_07607 Cicer arietinum Ca_07607 N 0.792
Ca_26354 Cicer arietinum Ca_26354 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.792
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.792
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
Bra035685 Brassica rapa Bra035685 N 0.792
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Bo4g070340 Brassica oleracea Bo4g070340 N 0.787
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.771
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.771
30099.m001671 Ricinus communis 30099.m001671 N 0.771
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.771
Pm021017 Prunus mume Pm021017 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Ca_04662 Cicer arietinum Ca_04662 N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.750
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.750
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.750
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.750
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.750
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
mgf022147m Mimulus guttatus mgf022147m N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.750
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.729
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
AGL23 Arabidopsis thaliana AT1G65360 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.729
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.729
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.729
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.729
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.729
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.729
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.729
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
Pm030655 Prunus mume Pm030655 I 0.729
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.729
mgf022790m Mimulus guttatus mgf022790m N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
Ca_24185 Cicer arietinum Ca_24185 I 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.708
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.708
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708