Al_scaffold_0001_74 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0001_74 T252779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0001_74 MADS box 15 62

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL28 Arabidopsis thaliana AT1G01530 N 0.958
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.938
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.896
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.896
Cla006571 Citrullus lanatus Cla006571 N 0.896
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.896
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.896
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.896
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.896
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.896
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.896
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.875
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.875
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.875
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.875
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.875
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.875
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.875
30099.m001672 Ricinus communis 30099.m001672 N 0.875
Pm021071 Prunus mume Pm021071 N 0.875
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.875
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.875
Bra002480 Brassica rapa Bra002480 N 0.875
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.868
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.854
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.854
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.854
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
AGL62 Arabidopsis thaliana AT5G60440 I 0.854
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.854
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.854
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.854
MDP0000434703 Malus domestica MDP0000434703 I 0.854
TCM_006323 Theobroma cacao TCM_006323 N 0.854
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
Bo9g142570 Brassica oleracea Bo9g142570 N 0.854
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.854
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.854
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
MDP0000278770 Malus domestica MDP0000278770 N 0.833
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.833
Pm021018 Prunus mume Pm021018 N 0.833
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.833
Ca_04660 Cicer arietinum Ca_04660 N 0.833
Ca_04659 Cicer arietinum Ca_04659 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
Ca_04661 Cicer arietinum Ca_04661 N 0.833
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
AGL23 Arabidopsis thaliana AT1G65360 N 0.833
Ca_04665 Cicer arietinum Ca_04665 N 0.833
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.833
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
MDP0000233925 Malus domestica MDP0000233925 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
Bra020247 Brassica rapa Bra020247 N 0.833
Bo1g112460 Brassica oleracea Bo1g112460 N 0.833
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.833
Bo2g024910 Brassica oleracea Bo2g024910 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.812
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.812
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.812
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.812
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.812
Bra038225 Brassica rapa Bra038225 N 0.812
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.812
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.812
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.812
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.812
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.812
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.792
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.792
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.792
Pm021070 Prunus mume Pm021070 N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.792
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.792
Ca_04662 Cicer arietinum Ca_04662 N 0.792
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.787
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.778
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.771
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.771
MDP0000168914 Malus domestica MDP0000168914 N 0.771
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
Bo2g024870 Brassica oleracea Bo2g024870 N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
29613.m000367 Ricinus communis 29613.m000367 N 0.771
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
mgf022147m Mimulus guttatus mgf022147m N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.761
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.750
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
GLYMA11G03261 Glycine max GLYMA11G03261 N 0.739
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
Bo4g165540 Brassica oleracea Bo4g165540 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
evm.TU.supercontig_109.51 Carica papaya evm.TU.supercontig_109.51 N 0.727
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.723
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.723
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.708
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.708
Aquca_005_00477 Aquilegia coerulea Aquca_005_00477 N 0.708
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
Bra020242 Brassica rapa Bra020242 N 0.708
Bo4g111230 Brassica oleracea Bo4g111230 I 0.708
Bo2g024900 Brassica oleracea Bo2g024900 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
Bra011938 Brassica rapa Bra011938 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
Ciclev10018138m.g Citrus clementina Ciclev10018138m.g N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702
evm.TU.supercontig_900.5 Carica papaya evm.TU.supercontig_900.5 N 0.702
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.702
Bra035685 Brassica rapa Bra035685 N 0.702
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700