AT4G36590 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT4G36590 T252896_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G36590.1 MADS box 15 62

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.938
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.917
Cla006571 Citrullus lanatus Cla006571 N 0.875
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.875
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
Ca_04659 Cicer arietinum Ca_04659 N 0.875
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.875
Ca_04660 Cicer arietinum Ca_04660 N 0.875
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.875
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
TCM_006323 Theobroma cacao TCM_006323 N 0.854
30099.m001672 Ricinus communis 30099.m001672 N 0.854
Ca_04665 Cicer arietinum Ca_04665 N 0.854
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
Pm021071 Prunus mume Pm021071 N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
Bo1g112460 Brassica oleracea Bo1g112460 N 0.854
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.854
Bo5g113750 Brassica oleracea Bo5g113750 N 0.854
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
MDP0000434703 Malus domestica MDP0000434703 I 0.854
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
Bo9g142570 Brassica oleracea Bo9g142570 N 0.833
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
Pm021018 Prunus mume Pm021018 N 0.833
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.833
Bra038225 Brassica rapa Bra038225 N 0.833
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.833
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.833
Bra002480 Brassica rapa Bra002480 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
Bra022434 Brassica rapa Bra022434 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
MDP0000278770 Malus domestica MDP0000278770 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
Ca_04661 Cicer arietinum Ca_04661 N 0.833
MDP0000233925 Malus domestica MDP0000233925 N 0.833
AGL62 Arabidopsis thaliana AT5G60440 I 0.833
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.833
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.833
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.833
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.833
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.833
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.833
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.833
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.812
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.812
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.812
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.812
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
MDP0000221590 Malus domestica MDP0000221590 N 0.812
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.792
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.792
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
mgf022790m Mimulus guttatus mgf022790m N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
Pm021017 Prunus mume Pm021017 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.792
Ca_04662 Cicer arietinum Ca_04662 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.792
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.792
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.787
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.771
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.771
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.756
29613.m000367 Ricinus communis 29613.m000367 N 0.750
mgf022625m Mimulus guttatus mgf022625m N 0.750
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
mgf022147m Mimulus guttatus mgf022147m N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.750
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.750
Bra011938 Brassica rapa Bra011938 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
Bra035685 Brassica rapa Bra035685 N 0.745
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.729
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.729
TCM_006325 Theobroma cacao TCM_006325 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.729
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.729
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.729
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.729
Pm030655 Prunus mume Pm030655 I 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.729
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
evm.TU.supercontig_109.51 Carica papaya evm.TU.supercontig_109.51 N 0.727
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.723
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
Bra007829 Brassica rapa Bra007829 N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
GRMZM2G137289 Zea mays GRMZM2G137289 I 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.708
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.708
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.708
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
evm.TU.supercontig_900.5 Carica papaya evm.TU.supercontig_900.5 N 0.702
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700