AGL28 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G01530 T252833_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G01530.1 MADS box 15 62

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.958
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.896
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.875
Cla006571 Citrullus lanatus Cla006571 N 0.854
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.854
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.854
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.854
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.854
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.854
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.854
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.854
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.854
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.842
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
30099.m001672 Ricinus communis 30099.m001672 N 0.833
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.833
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.833
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.833
Pm021071 Prunus mume Pm021071 N 0.833
Bra002480 Brassica rapa Bra002480 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.812
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
MDP0000434703 Malus domestica MDP0000434703 I 0.812
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.812
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.812
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.812
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.812
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
AGL62 Arabidopsis thaliana AT5G60440 I 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.812
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.792
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.792
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.792
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.792
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.792
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.792
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.792
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.792
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.792
MDP0000278770 Malus domestica MDP0000278770 N 0.792
MDP0000233925 Malus domestica MDP0000233925 N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
Bo2g024910 Brassica oleracea Bo2g024910 N 0.792
Bo1g112460 Brassica oleracea Bo1g112460 N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
AGL23 Arabidopsis thaliana AT1G65360 N 0.792
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
Bra020247 Brassica rapa Bra020247 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.792
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.792
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.792
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.792
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.792
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
Ca_04665 Cicer arietinum Ca_04665 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
Ca_04659 Cicer arietinum Ca_04659 N 0.792
Ca_04660 Cicer arietinum Ca_04660 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.771
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
Bo5g113750 Brassica oleracea Bo5g113750 N 0.771
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
Bra038225 Brassica rapa Bra038225 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
29613.m000367 Ricinus communis 29613.m000367 N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.771
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.771
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.771
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.771
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.771
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.771
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.771
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.771
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Bo2g024870 Brassica oleracea Bo2g024870 N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
MDP0000221590 Malus domestica MDP0000221590 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.750
Ca_04662 Cicer arietinum Ca_04662 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.739
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.729
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
GLYMA11G03261 Glycine max GLYMA11G03261 N 0.717
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.708
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Pm016629 Prunus mume Pm016629 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700