chr3.CM0279.290.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr3.CM0279.290.nc T259329_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0279.290.nc MADS box 18 65

Links

Other MADS box family TFs
Other Lotus japonicus TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.896
TCM_006323 Theobroma cacao TCM_006323 N 0.896
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.875
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.875
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
Cla006571 Citrullus lanatus Cla006571 N 0.875
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.875
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.875
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.875
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.875
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.875
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.875
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.875
Pm021018 Prunus mume Pm021018 N 0.875
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.875
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.854
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.854
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.854
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.854
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.854
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.854
Pm021071 Prunus mume Pm021071 N 0.854
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
Ca_04660 Cicer arietinum Ca_04660 N 0.854
Bra022434 Brassica rapa Bra022434 N 0.854
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.854
30099.m001672 Ricinus communis 30099.m001672 N 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
Ca_04659 Cicer arietinum Ca_04659 N 0.854
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.854
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.854
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.854
Ca_04665 Cicer arietinum Ca_04665 N 0.854
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.854
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.854
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.854
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.854
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.854
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
MDP0000434703 Malus domestica MDP0000434703 I 0.833
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.833
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.833
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.833
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.833
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.833
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.833
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.833
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
Bo1g112460 Brassica oleracea Bo1g112460 N 0.833
AGL62 Arabidopsis thaliana AT5G60440 I 0.833
Bo4g165540 Brassica oleracea Bo4g165540 N 0.833
Bo5g113750 Brassica oleracea Bo5g113750 N 0.833
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.833
Bra011938 Brassica rapa Bra011938 N 0.833
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.833
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.833
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.833
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
Pm021070 Prunus mume Pm021070 N 0.833
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.833
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.833
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.833
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.833
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.833
Bo4g070340 Brassica oleracea Bo4g070340 N 0.830
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.812
mgf024307m Mimulus guttatus mgf024307m N 0.812
mgf018529m Mimulus guttatus mgf018529m N 0.812
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.812
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.812
Ca_04661 Cicer arietinum Ca_04661 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.812
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.812
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.812
Bra038225 Brassica rapa Bra038225 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.812
MDP0000221590 Malus domestica MDP0000221590 N 0.812
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
MDP0000233925 Malus domestica MDP0000233925 N 0.812
MDP0000278770 Malus domestica MDP0000278770 N 0.812
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.812
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
Bra035685 Brassica rapa Bra035685 N 0.809
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.792
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
MDP0000168914 Malus domestica MDP0000168914 N 0.792
Ca_04662 Cicer arietinum Ca_04662 N 0.792
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.792
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.792
29613.m000367 Ricinus communis 29613.m000367 N 0.792
Pm021017 Prunus mume Pm021017 N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.773
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.771
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
mgf022790m Mimulus guttatus mgf022790m N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.771
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.771
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.771
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
Ca_07607 Cicer arietinum Ca_07607 N 0.771
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.771
Ca_26354 Cicer arietinum Ca_26354 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.771
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.771
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.756
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.750
mgf022147m Mimulus guttatus mgf022147m N 0.750
Bra026764 Brassica rapa Bra026764 N 0.750
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.750
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.750
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.750
Pm016629 Prunus mume Pm016629 N 0.750
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.750
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.750
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.750
30099.m001671 Ricinus communis 30099.m001671 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.729
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.729
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.729
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.729
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.729
mgf022625m Mimulus guttatus mgf022625m N 0.729
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
POPTR_0007s03410 Populus trichocarpa POPTR_0007s03410 N 0.714
MTR_3g067910 Medicago truncatula MTR_3g067910 N 0.711
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.708
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.708
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.708
Bo2g024910 Brassica oleracea Bo2g024910 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.708
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
Ca_04658 Cicer arietinum Ca_04658 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
GLYMA02G35080 Glycine max GLYMA02G35080 N 0.702