29613.m000367 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 29613.m000367 T257139_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29613.m000367 MADS box 15 62

Links

Other MADS box family TFs
Other Ricinus communis TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30099.m001671 Ricinus communis 30099.m001671 N 0.938
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.938
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.938
Ca_26354 Cicer arietinum Ca_26354 N 0.917
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.917
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.917
Ca_07607 Cicer arietinum Ca_07607 N 0.917
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.917
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.917
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.896
mgf024307m Mimulus guttatus mgf024307m N 0.896
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.896
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.896
mgf018529m Mimulus guttatus mgf018529m N 0.896
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.896
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.896
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.896
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.875
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.875
Pm021070 Prunus mume Pm021070 N 0.875
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.875
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.875
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.875
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.875
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.875
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.875
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.854
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.854
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.854
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.854
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.854
AGL61 Arabidopsis thaliana AT2G24840 N 0.854
TCM_040735 Theobroma cacao TCM_040735 N 0.854
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.854
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.854
MDP0000168914 Malus domestica MDP0000168914 N 0.854
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.854
Bra026764 Brassica rapa Bra026764 N 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.833
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.833
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.833
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.833
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.833
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.812
Bra007829 Brassica rapa Bra007829 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.812
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.812
Bo8g099550 Brassica oleracea Bo8g099550 N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
Pm016629 Prunus mume Pm016629 N 0.812
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.792
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
Cla006571 Citrullus lanatus Cla006571 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.792
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.792
Bra032057 Brassica rapa Bra032057 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.771
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.771
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
30099.m001672 Ricinus communis 30099.m001672 N 0.771
Pm021071 Prunus mume Pm021071 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.771
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.771
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.771
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.771
Bo4g157220 Brassica oleracea Bo4g157220 N 0.771
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
TCM_006324 Theobroma cacao TCM_006324 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.771
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.766
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
MDP0000221590 Malus domestica MDP0000221590 N 0.750
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.750
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
MDP0000434703 Malus domestica MDP0000434703 I 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
mgf021403m Mimulus guttatus mgf021403m N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.750
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.750
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
29838.m001672 Ricinus communis 29838.m001672 N 0.750
Ca_04665 Cicer arietinum Ca_04665 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.750
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.750
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.750
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.750
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
Bra035685 Brassica rapa Bra035685 N 0.745
mgf025566m Mimulus guttatus mgf025566m N 0.729
mgf024490m Mimulus guttatus mgf024490m N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.729
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.729
mgf023207m Mimulus guttatus mgf023207m N 0.729
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.729
mgf022403m Mimulus guttatus mgf022403m N 0.729
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.729
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.729
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.729
MDP0000233925 Malus domestica MDP0000233925 N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
Bra002480 Brassica rapa Bra002480 N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
F775_04223 Aegilops tauschii F775_04223 I 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.729
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
Ca_04662 Cicer arietinum Ca_04662 N 0.729
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
VIT_07s0005g06590 Vitis vinifera VIT_07s0005g06590 N 0.729
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.729
mgf020533m Mimulus guttatus mgf020533m N 0.729
Ca_04661 Cicer arietinum Ca_04661 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
Cla010744 Citrullus lanatus Cla010744 N 0.729
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.729
mgf017842m Mimulus guttatus mgf017842m N 0.729
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.723
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.723
POPTR_0007s03410 Populus trichocarpa POPTR_0007s03410 N 0.714
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
LjSGA_100222.1 Lotus japonicus LjSGA_100222.1 N 0.708
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.708
AMTR_s00025p00244880 Amborella trichopoda AMTR_s00025p00244880 N 0.708
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
Pm002317 Prunus mume Pm002317 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
Bo9g142570 Brassica oleracea Bo9g142570 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
mgf018184m Mimulus guttatus mgf018184m N 0.708
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.708
Bra011938 Brassica rapa Bra011938 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.708
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.708
mgf022790m Mimulus guttatus mgf022790m N 0.708
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.708
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.708
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.708
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N 0.708
mgf020939m Mimulus guttatus mgf020939m N 0.708
Ca_04658 Cicer arietinum Ca_04658 N 0.708
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
VIT_00s0386g00010 Vitis vinifera VIT_00s0386g00010 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
TCM_000878 Theobroma cacao TCM_000878 N 0.702
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702