cassava8711.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava8711.m1 T257247_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava8711.m1 MADS box 15 62

Links

Other MADS box family TFs
Other Manihot esculenta TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.896
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.875
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.854
29838.m001672 Ricinus communis 29838.m001672 N 0.854
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.833
30099.m001672 Ricinus communis 30099.m001672 N 0.833
Cla006571 Citrullus lanatus Cla006571 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.792
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
Ca_04659 Cicer arietinum Ca_04659 N 0.792
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.792
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.792
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.792
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.792
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.792
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.771
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.771
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.771
Bra022434 Brassica rapa Bra022434 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.771
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.771
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Ca_04665 Cicer arietinum Ca_04665 N 0.771
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.771
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
MDP0000434703 Malus domestica MDP0000434703 I 0.771
Pm021071 Prunus mume Pm021071 N 0.771
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.771
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Bra038225 Brassica rapa Bra038225 N 0.750
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
MDP0000233925 Malus domestica MDP0000233925 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
MDP0000278770 Malus domestica MDP0000278770 N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.750
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.750
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.750
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.750
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.750
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.750
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.750
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.750
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.750
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.750
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.750
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.750
Ca_04661 Cicer arietinum Ca_04661 N 0.750
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.750
Pm021018 Prunus mume Pm021018 N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.729
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.729
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Bra002480 Brassica rapa Bra002480 N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708
mgf024307m Mimulus guttatus mgf024307m N 0.708
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.708
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
mgf018529m Mimulus guttatus mgf018529m N 0.708
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bra032057 Brassica rapa Bra032057 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708