cassava21573.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava21573.m1 T257193_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21573.m1 MADS box 15 62

Links

Other MADS box family TFs
Other Manihot esculenta TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.896
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.875
29838.m001672 Ricinus communis 29838.m001672 N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.750
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.750
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.750
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
MDP0000434703 Malus domestica MDP0000434703 I 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.750
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.750
29613.m000367 Ricinus communis 29613.m000367 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
Pm021071 Prunus mume Pm021071 N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
TCM_006323 Theobroma cacao TCM_006323 N 0.750
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.729
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.729
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.729
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
MDP0000233925 Malus domestica MDP0000233925 N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.729
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.729
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.729
Ca_04661 Cicer arietinum Ca_04661 N 0.729
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.729
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
Pm021018 Prunus mume Pm021018 N 0.708
mgf024307m Mimulus guttatus mgf024307m N 0.708
mgf018529m Mimulus guttatus mgf018529m N 0.708
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.708
29838.m001673 Ricinus communis 29838.m001673 N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.708
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.708
Bra022434 Brassica rapa Bra022434 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708