MTR_5g055100 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_5g055100 T254803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AES97486 MADS box 17 64

Links

Other MADS box family TFs
Other Medicago truncatula TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.979
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.979
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.938
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.938
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.938
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.917
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.917
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.915
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.896
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.875
Ca_04665 Cicer arietinum Ca_04665 N 0.875
Ca_04659 Cicer arietinum Ca_04659 N 0.875
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.875
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.875
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.875
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.875
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.875
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.875
Ca_04660 Cicer arietinum Ca_04660 N 0.875
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.867
Ca_04662 Cicer arietinum Ca_04662 N 0.854
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.854
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.854
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.854
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.854
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.854
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.854
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.854
Cla006571 Citrullus lanatus Cla006571 N 0.854
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.854
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.854
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
Ca_04661 Cicer arietinum Ca_04661 N 0.854
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.833
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.833
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.833
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.833
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.833
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.833
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.833
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
30099.m001672 Ricinus communis 30099.m001672 N 0.833
Pm021071 Prunus mume Pm021071 N 0.833
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.833
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.833
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.833
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.833
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.833
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.833
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.812
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.812
MDP0000434703 Malus domestica MDP0000434703 I 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.812
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.812
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.812
AGL62 Arabidopsis thaliana AT5G60440 I 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.812
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.812
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.812
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.812
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.792
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.792
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.792
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
MDP0000278770 Malus domestica MDP0000278770 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.792
Bo9g142570 Brassica oleracea Bo9g142570 N 0.792
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
MDP0000233925 Malus domestica MDP0000233925 N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.792
MTR_3g067910 Medicago truncatula MTR_3g067910 N 0.778
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.773
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.771
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.771
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.771
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.771
MTR_3g067870 Medicago truncatula MTR_3g067870 N 0.766
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
29613.m000367 Ricinus communis 29613.m000367 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.750
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.729
evm.TU.contig_37107 Carica papaya evm.TU.contig_37107 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.729
mgf018529m Mimulus guttatus mgf018529m N 0.729
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
mgf022790m Mimulus guttatus mgf022790m N 0.729
mgf024307m Mimulus guttatus mgf024307m N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
evm.TU.supercontig_109.51 Carica papaya evm.TU.supercontig_109.51 N 0.727
PGSC0003DMG400043595 Solanum tuberosum PGSC0003DMG400043595 N 0.717
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
evm.TU.supercontig_109.50 Carica papaya evm.TU.supercontig_109.50 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
evm.TU.contig_38552 Carica papaya evm.TU.contig_38552 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
Bra011938 Brassica rapa Bra011938 N 0.708
evm.TU.supercontig_695.2 Carica papaya evm.TU.supercontig_695.2 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.702
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.702
GLYMA02G35080 Glycine max GLYMA02G35080 N 0.702
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.702