CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_029518
(
Theobroma cacao
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
TCM_029518
T256470_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY27744
MADS box
10
57
MVKDSSSRQVTFSKRRTGLFKKANELATLCGAQVAIVVFSPGGKPFSF
Links
Other
MADS box
family TFs
Other
Theobroma cacao
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29693.m002039
Ricinus communis
29693.m002039
I
0.938
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.917
Pm030655
Prunus mume
Pm030655
I
0.896
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.896
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.896
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.896
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.896
MDP0000274606
Malus domestica
MDP0000274606
N
0.875
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.875
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.875
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.875
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.854
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.854
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.854
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.854
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.833
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.833
Cla019897
Citrullus lanatus
Cla019897
N
0.833
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.833
Ca_05023
Cicer arietinum
Ca_05023
I
0.833
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.812
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.812
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.812
MDP0000120467
Malus domestica
MDP0000120467
N
0.812
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.792
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.792
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.792
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.792
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.792
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.792
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.792
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.792
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.792
AGL29
Arabidopsis thaliana
AT2G34440
I
0.792
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.792
Bra021910
Brassica rapa
Bra021910
I
0.771
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.771
Ca_24185
Cicer arietinum
Ca_24185
I
0.771
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.771
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.750
AGL62
Arabidopsis thaliana
AT5G60440
I
0.750
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.750
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.750
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.750
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.750
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.750
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.750
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.750
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.732
AGL91
Arabidopsis thaliana
AT3G66656
D
0.729
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.729
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.729
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.729
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.729
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.729
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.729
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.729
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.729
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.729
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.729
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
PDK_20s1551551g001
Phoenix dactylifera
PDK_20s1551551g001
I
0.708
AGL61
Arabidopsis thaliana
AT2G24840
N
0.708
BRADI3G18670
Brachypodium distachyon
BRADI3G18670
N
0.708
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.708
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.708
Bra002480
Brassica rapa
Bra002480
N
0.708
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.708
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.708
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.708
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.708
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.708
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.708
TCM_006323
Theobroma cacao
TCM_006323
N
0.708
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.708
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.708
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.708
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.708
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.708
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.708
TCM_006325
Theobroma cacao
TCM_006325
N
0.708
Ca_04665
Cicer arietinum
Ca_04665
N
0.708
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.708
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.708
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.708
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.708
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.708
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.708
Pm021071
Prunus mume
Pm021071
N
0.708
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.708
Aquca_040_00096
Aquilegia coerulea
Aquca_040_00096
N
0.708
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.708
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.708