TCM_029518 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_029518 T256470_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY27744 MADS box 10 57

Links

Other MADS box family TFs
Other Theobroma cacao TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002039 Ricinus communis 29693.m002039 I 0.938
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.917
Pm030655 Prunus mume Pm030655 I 0.896
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.896
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.896
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.896
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.896
MDP0000274606 Malus domestica MDP0000274606 N 0.875
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.875
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.875
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.875
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.854
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.854
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.854
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.854
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.833
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.833
Cla019897 Citrullus lanatus Cla019897 N 0.833
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.833
Ca_05023 Cicer arietinum Ca_05023 I 0.833
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.812
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.812
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.812
MDP0000120467 Malus domestica MDP0000120467 N 0.812
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.792
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.792
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.792
Lus10011787.g Linum usitatissimum Lus10011787.g N 0.792
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.792
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.792
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.792
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.792
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.792
AGL29 Arabidopsis thaliana AT2G34440 I 0.792
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.792
Bra021910 Brassica rapa Bra021910 I 0.771
Bo4g182590 Brassica oleracea Bo4g182590 I 0.771
Ca_24185 Cicer arietinum Ca_24185 I 0.771
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
MTR_8g046350 Medicago truncatula MTR_8g046350 N 0.750
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.750
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.750
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.750
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.750
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.750
GLYMA08G03820 Glycine max GLYMA08G03820 I 0.750
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.732
AGL91 Arabidopsis thaliana AT3G66656 D 0.729
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.729
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.729
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.729
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.729
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.708
AGL61 Arabidopsis thaliana AT2G24840 N 0.708
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
GLYMA08G03793 Glycine max GLYMA08G03793 N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.708
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
GLYMA08G38880 Glycine max GLYMA08G38880 I 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.708
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.708
Pm021071 Prunus mume Pm021071 N 0.708
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708