CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_1g054265
(
Medicago truncatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
MTR_1g054265
T254704_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH41725
MADS box
10
57
RVKDSNTRQVTFSKRRTGLFKKANELSILCGVEVAIVVFSPGNNPYSF
Links
Other
MADS box
family TFs
Other
Medicago truncatula
TFs
55 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.938
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.938
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.917
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.917
Ca_05023
Cicer arietinum
Ca_05023
I
0.917
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.896
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.896
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.896
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.896
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.875
Ca_24185
Cicer arietinum
Ca_24185
I
0.875
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.854
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.854
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.854
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.833
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.833
chr3.CM0059.60.nd
Lotus japonicus
chr3.CM0059.60.nd
N
0.812
TCM_029518
Theobroma cacao
TCM_029518
I
0.792
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.792
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.771
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.771
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.771
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.771
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.771
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.771
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.771
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.750
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.750
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.750
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.750
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.750
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.750
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.750
AGL91
Arabidopsis thaliana
AT3G66656
D
0.750
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.750
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.750
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.750
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.729
MDP0000274606
Malus domestica
MDP0000274606
N
0.729
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.729
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.729
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.729
Bra021910
Brassica rapa
Bra021910
I
0.729
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.729
Pm030655
Prunus mume
Pm030655
I
0.729
29693.m002039
Ricinus communis
29693.m002039
I
0.729
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.708
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.708
PDK_20s1551551g001
Phoenix dactylifera
PDK_20s1551551g001
I
0.708
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.708
MDP0000120467
Malus domestica
MDP0000120467
N
0.708
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.708
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.708
Cla019897
Citrullus lanatus
Cla019897
N
0.708
AGL29
Arabidopsis thaliana
AT2G34440
I
0.708