29693.m002039 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 29693.m002039 T257142_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL91
M10922_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G66656_01 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29693.m002039 MADS box 10 57

Links

Other MADS box family TFs
Other Ricinus communis TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_029518 Theobroma cacao TCM_029518 I 0.938
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.917
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.917
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.896
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.896
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.896
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.896
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.875
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.875
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.875
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.875
Pm030655 Prunus mume Pm030655 I 0.875
MDP0000274606 Malus domestica MDP0000274606 N 0.854
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.854
Lus10011787.g Linum usitatissimum Lus10011787.g N 0.833
Cla019897 Citrullus lanatus Cla019897 N 0.833
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.833
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.812
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.812
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.812
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.812
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.792
MDP0000120467 Malus domestica MDP0000120467 N 0.792
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.792
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.792
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.792
AGL29 Arabidopsis thaliana AT2G34440 I 0.792
Ca_05023 Cicer arietinum Ca_05023 I 0.792
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.792
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.771
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.771
Bo4g182590 Brassica oleracea Bo4g182590 I 0.771
Bra021910 Brassica rapa Bra021910 I 0.771
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.771
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.750
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.750
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.750
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.750
MTR_8g046350 Medicago truncatula MTR_8g046350 N 0.750
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.729
GLYMA08G03793 Glycine max GLYMA08G03793 N 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.729
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.729
AGL91 Arabidopsis thaliana AT3G66656 D 0.729
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.729
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.729
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
Ca_24185 Cicer arietinum Ca_24185 I 0.729
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.729
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.729
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.729
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.708
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.708
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.708
AGL61 Arabidopsis thaliana AT2G24840 N 0.708
GLYMA08G38880 Glycine max GLYMA08G38880 I 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
Traes_7DL_A773A64E2 Triticum aestivum Traes_7DL_A773A64E2 N 0.707