Bra021910 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra021910 T253311_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL91
M10922_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G66656_01 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021910.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g182590 Brassica oleracea Bo4g182590 I 1.000
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 1.000
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.979
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.979
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.979
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.979
AGL29 Arabidopsis thaliana AT2G34440 I 0.979
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.854
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.854
AGL91 Arabidopsis thaliana AT3G66656 D 0.854
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.854
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.854
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.833
Bo3g060720 Brassica oleracea Bo3g060720 I 0.812
Bra001209 Brassica rapa Bra001209 I 0.812
Ca_05023 Cicer arietinum Ca_05023 I 0.792
TCM_029518 Theobroma cacao TCM_029518 I 0.771
29693.m002039 Ricinus communis 29693.m002039 I 0.771
Pm030655 Prunus mume Pm030655 I 0.771
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.771
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.771
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.771
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.771
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.771
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.771
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.771
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.750
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.750
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.750
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.750
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.729
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.729
MDP0000274606 Malus domestica MDP0000274606 N 0.729
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.729
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.729
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.729
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.729
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.729
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.729
Ca_24185 Cicer arietinum Ca_24185 I 0.729
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.729
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.729
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.729
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.729
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.729
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.729
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.729
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.708
Cla019897 Citrullus lanatus Cla019897 N 0.708
chr3.CM0059.60.nd Lotus japonicus chr3.CM0059.60.nd N 0.708
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.708
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.708