nr1i2 (Tetraodon nigroviridis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSTNIG00000013932 T305008_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.944 0.700
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.923 0.686
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.923 0.686
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.923 0.686
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.923 0.686
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.804 0.671
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.794 0.643
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.794 0.643
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.794 0.643
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.794 0.643
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.794 0.643
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.794 0.643
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.794 0.643
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.794 0.643
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.794 0.643
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.757 0.614
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016937 Nuclear receptor 15 84

Links

Other Nuclear receptor family TFs
Other Tetraodon nigroviridis TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.960
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.944
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.944
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.944
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.944
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.944
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.940
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.930
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.930
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.928
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.923
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.923
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.923
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.923
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.923
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.923
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.923
NR1I2 Equus caballus ENSECAG00000008728 I 0.923
NR1I2 Homo sapiens ENSG00000144852 D 0.923
NR1I2 Felis catus ENSFCAG00000006092 I 0.923
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.923
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.923
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.915
NR1I2 Bos taurus ENSBTAG00000019557 I 0.915
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.914
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.909
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.909
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.904
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.900
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.900
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.895
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.894
nr1i2 Danio rerio ENSDARG00000029766 I 0.894
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.890
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.877
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.870
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.870
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.860
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.841
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.837
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.836
vdr-a Ciona intestinalis ENSCING00000020740 I 0.834
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.821
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.804
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.802
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.802
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.802
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.801
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.801
vdralpha Oryzias latipes ENSORLG00000001063 I 0.801
vdra Takifugu rubripes ENSTRUG00000011907 I 0.801
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.801
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.801
vdrb Danio rerio ENSDARG00000070721 I 0.801
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.801
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.801
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.801
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.801
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.801
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.801
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.801
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.801
vdr Oryzias latipes ENSORLG00000016402 I 0.801
Aan_R009572 Calypte anna Aan_R009572 I 0.800
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.800
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.800
VDR Anolis carolinensis ENSACAG00000013485 I 0.800
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.800
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.800
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.800
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.798
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.798
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.798
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.798
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.798
ENSONIG00000014385 Oreochromis niloticus ENSONIG00000014385 I 0.796
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.795
VDR Tupaia belangeri ENSTBEG00000005717 I 0.794
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.794
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.794
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.794
VDR Tursiops truncatus ENSTTRG00000012578 I 0.794
VDR Sus scrofa ENSSSCG00000020864 I 0.794
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.794
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.794
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.794
VDR Equus caballus ENSECAG00000015822 I 0.794
VDR Felis catus ENSFCAG00000024594 I 0.794
VDR Homo sapiens ENSG00000111424 D 0.794
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.794
VDR Gorilla gorilla ENSGGOG00000016473 I 0.794
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.794
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.794
VDR Bos taurus ENSBTAG00000016414 I 0.794
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.794
VDR Canis familiaris ENSCAFG00000009103 I 0.794
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.794
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.794
VDR Callithrix jacchus ENSCJAG00000015018 I 0.794
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.794
VDR Loxodonta africana ENSLAFG00000006418 I 0.794
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.794
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.794
VDR Microcebus murinus ENSMICG00000009017 I 0.794
VDR Otolemur garnettii ENSOGAG00000005480 I 0.794
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.794
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.794
Vdr Mus musculus ENSMUSG00000022479 D 0.794
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.794
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.794
VDR Macaca mulatta ENSMMUG00000006727 I 0.794
VDR Myotis lucifugus ENSMLUG00000000912 I 0.794
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.794
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.791
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.775
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.768
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.767
vdr.S Xenopus laevis XB-GENE-864847 I 0.766
vdr Xenopus tropicalis XB-GENE-486505 I 0.759
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.757
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.757
ENSTNIG00000006380 Tetraodon nigroviridis ENSTNIG00000006380 N 0.282