CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr1i3
(
Xenopus tropicalis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
XB-GENE-479859
T307253_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.941
0.614
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.924
0.814
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.883
0.643
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.841
0.600
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.841
0.600
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.841
0.600
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.841
0.600
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.841
0.600
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.841
0.600
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.841
0.600
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.841
0.600
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.841
0.600
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.840
0.600
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.840
0.600
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.840
0.600
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.840
0.600
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.771
0.600
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002941189
Nuclear receptor
56
125
KLCSVCGDKANGYHFHVLTCEGCKGFFRRSVSKGLHFTCPFTRSCPITKAKRRRCQACRLHKCFSVGMRK
Links
Other
Nuclear receptor
family TFs
Other
Xenopus tropicalis
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG006068.1
Alligator sinensis
Alligator_sinensis_CCG006068.1
I
0.946
ENSPSIG00000004437
Pelodiscus sinensis
ENSPSIG00000004437
I
0.943
NR1I2
Ochotona princeps
ENSOPRG00000010448
I
0.942
ENSSTOG00000014988
Ictidomys tridecemlineatus
ENSSTOG00000014988
I
0.941
Nr1i2
Rattus norvegicus
ENSRNOG00000002906
I
0.941
Nr1i2
Dipodomys ordii
ENSDORG00000003966
I
0.941
NR1I2
Cavia porcellus
ENSCPOG00000020161
I
0.941
Nr1i2
Mus musculus
ENSMUSG00000022809
D
0.941
Cmyd_10001928
Chelonia mydas
Cmyd_10001928
I
0.939
NR1I2
Oryctolagus cuniculus
ENSOCUG00000006125
I
0.936
Q9DFH3_CHICK
Gallus gallus
Q9DFH3_CHICK
I
0.924
ENSGALG00000028624
Gallus gallus
ENSGALG00000028624
D
0.924
ENSACAG00000001535
Anolis carolinensis
ENSACAG00000001535
I
0.919
Ogr03312
Ophisaurus gracilis
Ogr03312
I
0.889
ENSLACG00000010334
Latimeria chalumnae
ENSLACG00000010334
I
0.889
vdr
Oryzias latipes
ENSORLG00000016402
I
0.885
vdralpha
Oryzias latipes
ENSORLG00000001063
I
0.885
ENSXMAG00000004608
Xiphophorus maculatus
ENSXMAG00000004608
I
0.885
ENSONIG00000009200
Oreochromis niloticus
ENSONIG00000009200
I
0.885
vdra
Takifugu rubripes
ENSTRUG00000011907
I
0.885
vdrb
Danio rerio
ENSDARG00000070721
I
0.885
ENSGMOG00000019451
Gadus morhua
ENSGMOG00000019451
I
0.885
ENSPFOG00000014233
Poecilia formosa
ENSPFOG00000014233
I
0.885
ENSXMAG00000018707
Xiphophorus maculatus
ENSXMAG00000018707
I
0.885
vdrb
Takifugu rubripes
ENSTRUG00000011576
I
0.885
ENSPFOG00000001655
Poecilia formosa
ENSPFOG00000001655
I
0.885
vdrb
Tetraodon nigroviridis
ENSTNIG00000007031
I
0.885
ENSAMXG00000019854
Astyanax mexicanus
ENSAMXG00000019854
I
0.885
ENSGMOG00000012720
Gadus morhua
ENSGMOG00000012720
I
0.884
ENSAMXG00000012991
Astyanax mexicanus
ENSAMXG00000012991
I
0.884
vdrb
Gasterosteus aculeatus
ENSGACG00000007975
I
0.883
vdra
Gasterosteus aculeatus
ENSGACG00000004763
I
0.883
ENSPSIG00000018108
Pelodiscus sinensis
ENSPSIG00000018108
I
0.883
ENSLOCG00000005194
Lepisosteus oculatus
ENSLOCG00000005194
I
0.883
ENSONIG00000019378
Oreochromis niloticus
ENSONIG00000019378
I
0.883
Cmyd_10006875
Chelonia mydas
Cmyd_10006875
I
0.883
ENSPMAG00000000180
Petromyzon marinus
ENSPMAG00000000180
D
0.883
vdr-a
Ciona intestinalis
ENSCING00000020740
I
0.881
Pvit_07440
Pogona vitticeps
Pvit_07440
I
0.881
VDR
Anolis carolinensis
ENSACAG00000013485
I
0.881
ENSLACG00000019104
Latimeria chalumnae
ENSLACG00000019104
I
0.880
Pvit_09404
Pogona vitticeps
Pvit_09404
I
0.870
Pvit_09406
Pogona vitticeps
Pvit_09406
I
0.870
vdr.S
Xenopus laevis
XB-GENE-864847
I
0.859
vdr
Xenopus tropicalis
XB-GENE-486505
I
0.856
NR1I2
Myotis lucifugus
ENSMLUG00000002877
I
0.852
Myotis_brandtii_NR1I2_10031787
Myotis brandtii
Myotis_brandtii_NR1I2_10031787
I
0.852
D918_02615
Trichuris suis
D918_02615
I
0.846
TMUE_s0008014200
Trichuris muris
TMUE_s0008014200
I
0.846
Afo_R013462
Aptenodytes forsteri
Afo_R013462
I
0.846
D917_00700
Trichinella nativa
D917_00700
I
0.846
EFV58098
Trichinella spiralis
EFV58098
I
0.846
VDR
Meleagris gallopavo
ENSMGAG00000004846
I
0.844
ENSGALG00000026166
Gallus gallus
ENSGALG00000026166
I
0.844
VDR
Taeniopygia guttata
ENSTGUG00000017093
I
0.844
ENSCSAVG00000001918
Ciona savignyi
ENSCSAVG00000001918
I
0.844
Gfo_R005027
Geospiza fortis
Gfo_R005027
I
0.844
Aan_R009572
Calypte anna
Aan_R009572
I
0.844
ENSOARG00000019372
Ovis aries
ENSOARG00000019372
I
0.841
VDR
Oryctolagus cuniculus
ENSOCUG00000027507
I
0.841
VDR
Tursiops truncatus
ENSTTRG00000012578
I
0.841
ENSMMUP00000008847
Macaca fascicularis
ENSMMUP00000008847
I
0.841
VDR
Otolemur garnettii
ENSOGAG00000005480
I
0.841
ENSSTOG00000026741
Ictidomys tridecemlineatus
ENSSTOG00000026741
I
0.841
VDR
Pteropus vampyrus
ENSPVAG00000011085
I
0.841
ENSPPYG00000004448
Pongo abelii
ENSPPYG00000004448
I
0.841
Vdr
Rattus norvegicus
ENSRNOG00000054420
I
0.841
ENSPANG00000011327
Papio anubis
ENSPANG00000011327
I
0.841
ENSP00000229022-D1
Bos grunniens
ENSP00000229022-D1
I
0.841
VDR
Sus scrofa
ENSSSCG00000020864
I
0.841
Myotis_brandtii_VDR_10022134
Myotis brandtii
Myotis_brandtii_VDR_10022134
I
0.841
VDR
Tupaia belangeri
ENSTBEG00000005717
I
0.841
VDR
Equus caballus
ENSECAG00000015822
I
0.841
VDR
Dasypus novemcinctus
ENSDNOG00000039161
I
0.841
VDR
Erinaceus europaeus
ENSEEUG00000011116
I
0.841
VDR
Felis catus
ENSFCAG00000024594
I
0.841
VDR
Gorilla gorilla
ENSGGOG00000016473
I
0.841
VDR
Homo sapiens
ENSG00000111424
D
0.841
ENSCSAG00000006576
Chlorocebus sabaeus
ENSCSAG00000006576
I
0.841
ENSCPOG00000006025
Cavia porcellus
ENSCPOG00000006025
I
0.841
ENSNLEG00000017900
Nomascus leucogenys
ENSNLEG00000017900
I
0.841
ENSAMEG00000013706
Ailuropoda melanoleuca
ENSAMEG00000013706
I
0.841
VDR
Bos taurus
ENSBTAG00000016414
I
0.841
VDR
Canis familiaris
ENSCAFG00000009103
I
0.841
ENSCHOG00000008514
Choloepus hoffmanni
ENSCHOG00000008514
I
0.841
VDR
Loxodonta africana
ENSLAFG00000006418
I
0.841
VDR
Callithrix jacchus
ENSCJAG00000015018
I
0.841
VDR
Microcebus murinus
ENSMICG00000009017
I
0.841
VDR
Macaca mulatta
ENSMMUG00000006727
I
0.841
VDR
Myotis lucifugus
ENSMLUG00000000912
I
0.841
ENSMODG00000028774
Monodelphis domestica
ENSMODG00000028774
I
0.841
ENSMEUG00000014791
Macropus eugenii
ENSMEUG00000014791
I
0.841
ENSMPUG00000000419
Mustela putorius furo
ENSMPUG00000000419
I
0.841
Vdr
Mus musculus
ENSMUSG00000022479
D
0.841
NR1I2
Equus caballus
ENSECAG00000008728
I
0.840
ENSAMEG00000007006
Ailuropoda melanoleuca
ENSAMEG00000007006
I
0.840
ENSNLEG00000005060
Nomascus leucogenys
ENSNLEG00000005060
I
0.840
ENSTSYG00000010757
Tarsius syrichta
ENSTSYG00000010757
I
0.840
NR1I2
Macaca mulatta
ENSMMUG00000001976
I
0.840
NR1I2
Otolemur garnettii
ENSOGAG00000006017
I
0.840
ENSP00000336528
Macaca fascicularis
ENSP00000336528
I
0.840
NR1I2
Callithrix jacchus
ENSCJAG00000008854
I
0.840
NR1I2
Pan troglodytes
ENSPTRG00000015263
I
0.840
NR1I2
Felis catus
ENSFCAG00000006092
I
0.840
NR1I2
Homo sapiens
ENSG00000144852
D
0.840
NR1I2
Echinops telfairi
ENSETEG00000018117
I
0.840
NR1I2
Gorilla gorilla
ENSGGOG00000007361
I
0.840
NR1I2
Bos taurus
ENSBTAG00000019557
I
0.830
ENSP00000336528-D1
Bos grunniens
ENSP00000336528-D1
I
0.830
NR1I2
Sus scrofa
ENSSSCG00000011890
I
0.830
ACOC_0001278301
Angiostrongylus costaricensis
ACOC_0001278301
I
0.829
NBR_0001980401
Nippostrongylus brasiliensis
NBR_0001980401
I
0.824
TELCIR_16351
Teladorsagia circumcincta
TELCIR_16351
I
0.824
HCOI00910600
Haemonchus contortus
HCOI00910600
I
0.823
HCOI00433800
Haemonchus contortus
HCOI00433800
I
0.823
NR1I2
Pteropus vampyrus
ENSPVAG00000000884
I
0.821
NECAME_11142
Necator americanus
NECAME_11142
I
0.821
ANCCAN_11234
Ancylostoma caninum
ANCCAN_11234
I
0.821
ENSONIG00000014385
Oreochromis niloticus
ENSONIG00000014385
I
0.819
ENSPMAG00000003695
Petromyzon marinus
ENSPMAG00000003695
I
0.817
nhr-8
Caenorhabditis elegans
WBGene00003607
I
0.816
nr1i2.L
Xenopus laevis
XB-GENE-17336519
I
0.814
DICVIV_05958
Dictyocaulus viviparus
DICVIV_05958
I
0.806
GJ20887
Drosophila virilis
FBgn0208023
I
0.805
GI21285
Drosophila mojavensis
FBgn0144015
I
0.805
nr1i2
Danio rerio
ENSDARG00000029766
I
0.805
GH20948
Drosophila grimshawi
FBgn0128410
I
0.805
nr1i2.S
Xenopus laevis
XB-GENE-865343
I
0.804
CJA16298
Caenorhabditis japonica
CJA16298
N
0.804
TriadG21656
Trichoplax adhaerens
TriadG21656
I
0.801
CRE12534
Caenorhabditis remanei
CRE12534
I
0.798
CRE05362
Caenorhabditis remanei
CRE05362
I
0.798
ENSAMXG00000008863
Astyanax mexicanus
ENSAMXG00000008863
I
0.797
CGOC_0001446101
Cylicostephanus goldi
CGOC_0001446101
I
0.797
L893_g6815
Steinernema glaseri
L893_g6815
I
0.794
L889_g17804
Steinernema feltiae
L889_g17804
I
0.794
L596_g17693
Steinernema carpocapsae
L596_g17693
I
0.794
L898_g14201
Steinernema monticolum
L898_g14201
I
0.794
L892_g24092
Steinernema scapterisci
L892_g24092
I
0.794
ANCCAN_22289
Ancylostoma caninum
ANCCAN_22289
I
0.792
nr1i2
Tetraodon nigroviridis
ENSTNIG00000013932
I
0.791
Bm2982
Brugia malayi
Bm2982
I
0.789
nAv.1.0.1.g02667
Acanthocheilonema viteae
nAv.1.0.1.g02667
I
0.789
BTMF_0001180601
Brugia timori
BTMF_0001180601
I
0.789
DME_0000391501
Dracunculus medinensis
DME_0000391501
I
0.789
TELCIR_04193
Teladorsagia circumcincta
TELCIR_04193
I
0.789
OFLC_0000511401
Onchocerca flexuosa
OFLC_0000511401
I
0.789
WUBG_00356
Wuchereria bancrofti
WUBG_00356
I
0.789
WBGene00245913
Onchocerca volvulus
WBGene00245913
I
0.789
EEL_0000192101
Elaeophora elaphi
EEL_0000192101
I
0.789
nLs.2.1.2.g05295
Litomosoides sigmodontis
nLs.2.1.2.g05295
I
0.789
LOAG_16842
Loa loa
LOAG_16842
I
0.789
nOo.2.0.1.g07306
Onchocerca ochengi
nOo.2.0.1.g07306
I
0.789
GPUH_0000103801
Gongylonema pulchrum
GPUH_0000103801
I
0.789
CBG05944
Caenorhabditis briggsae
CBG05944
I
0.788
ASU_11275
Ascaris suum
ASU_11275
I
0.787
TCLT_0000569201
Thelazia callipaeda
TCLT_0000569201
I
0.787
TCNE_0001577801
Toxocara canis
TCNE_0001577801
I
0.787
nRc.2.0.1.g36086
Romanomermis culicivorax
nRc.2.0.1.g36086
I
0.786
ENSTSYG00000003990
Tarsius syrichta
ENSTSYG00000003990
I
0.784
HPBE_0002060301
Heligmosomoides bakeri
HPBE_0002060301
I
0.780
GG10830
Drosophila erecta
FBgn0103135
I
0.775
GD10334
Drosophila simulans
FBgn0182106
I
0.771
GL16258
Drosophila persimilis
FBgn0153862
I
0.771
GF13818
Drosophila ananassae
FBgn0090845
I
0.771
EcR
Drosophila melanogaster
FBgn0000546
D
0.771
GM16480
Drosophila sechellia
FBgn0171395
I
0.771
GK21996
Drosophila willistoni
FBgn0223981
I
0.771
GA24101
Drosophila pseudoobscura
FBgn0245500
I
0.771
EcR
Drosophila pseudoobscura
FBgn0243551
I
0.771
GE19426
Drosophila yakuba
FBgn0236769
I
0.771
vdra
Tetraodon nigroviridis
ENSTNIG00000005559
I
0.764
L893_g24576
Steinernema glaseri
L893_g24576
I
0.764
ENSAMXG00000019070
Astyanax mexicanus
ENSAMXG00000019070
I
0.763
rorc
Danio rerio
ENSDARG00000087195
I
0.763
HCOI00283900
Haemonchus contortus
HCOI00283900
I
0.759
HCOI00567800
Haemonchus contortus
HCOI00567800
I
0.759
AALB010791
Anopheles albimanus
AALB010791
I
0.758
ACOM026429
Anopheles coluzzii
ACOM026429
I
0.758
AARA003299
Anopheles arabiensis
AARA003299
I
0.758
AGAP012211
Anopheles gambiae
AGAP012211
I
0.758
LCUP007589
Lucilia cuprina
LCUP007589
I
0.758
HMEL012265
Heliconius melpomene
HMEL012265
I
0.758
CpipJ_CPIJ002963
Culex pipiens
CpipJ_CPIJ002963
I
0.758
KGM_08219
Danaus plexippus
KGM_08219
I
0.758
CPIJ002963
Culex quinquefasciatus
CPIJ002963
I
0.758
ACUA000806
Anopheles culicifacies
ACUA000806
I
0.758
BGIBMGA006767
Bombyx mori
BGIBMGA006767
I
0.758
AATE015478
Anopheles atroparvus
AATE015478
I
0.758
ADAC008672
Anopheles darlingi
ADAC008672
I
0.758
ADIR001886
Anopheles dirus
ADIR001886
I
0.758
AQUA002870
Anopheles quadriannulatus
AQUA002870
I
0.758
ASTEI02489
Anopheles stephensi
ASTEI02489
I
0.758
MDOA013387
Musca domestica
MDOA013387
I
0.758
AMIN006955
Anopheles minimus
AMIN006955
I
0.758
ECR
Aedes aegypti
AAEL009600
I
0.758
AFAF021556
Anopheles farauti
AFAF021556
I
0.758
AFUN015736
Anopheles funestus
AFUN015736
I
0.758
AEPI000843
Anopheles epiroticus
AEPI000843
I
0.758
AMEM018998
Anopheles merus
AMEM018998
I
0.758
PPAI003337
Phlebotomus papatasi
PPAI003337
I
0.757
CBN28114
Caenorhabditis brenneri
CBN28114
N
0.753
ENSPMAG00000008742
Petromyzon marinus
ENSPMAG00000008742
I
0.750
NR1I3
Ochotona princeps
ENSOPRG00000003455
I
0.749
NR1I3
Procavia capensis
ENSPCAG00000013933
I
0.749
NR1I3
Loxodonta africana
ENSLAFG00000001180
I
0.749
Ppa-sex-1
Pristionchus pacificus
PPA19965
I
0.749