nr1i3 (Xenopus tropicalis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 XB-GENE-479859 T307253_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.941 0.614
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.924 0.814
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.883 0.643
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.841 0.600
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.841 0.600
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.841 0.600
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.841 0.600
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.841 0.600
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.841 0.600
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.841 0.600
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.841 0.600
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.841 0.600
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.840 0.600
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.840 0.600
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.840 0.600
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.840 0.600
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW

WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.771 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002941189 Nuclear receptor 56 125

Links

Other Nuclear receptor family TFs
Other Xenopus tropicalis TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.946
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.943
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.942
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.941
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.941
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.941
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.941
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.941
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.939
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.936
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.924
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.924
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.919
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.889
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.889
vdr Oryzias latipes ENSORLG00000016402 I 0.885
vdralpha Oryzias latipes ENSORLG00000001063 I 0.885
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.885
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.885
vdra Takifugu rubripes ENSTRUG00000011907 I 0.885
vdrb Danio rerio ENSDARG00000070721 I 0.885
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.885
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.885
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.885
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.885
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.885
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.885
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.885
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.884
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.884
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.883
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.883
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.883
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.883
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.883
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.883
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.883
vdr-a Ciona intestinalis ENSCING00000020740 I 0.881
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.881
VDR Anolis carolinensis ENSACAG00000013485 I 0.881
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.880
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.870
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.870
vdr.S Xenopus laevis XB-GENE-864847 I 0.859
vdr Xenopus tropicalis XB-GENE-486505 I 0.856
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.852
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.852
D918_02615 Trichuris suis D918_02615 I 0.846
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.846
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.846
D917_00700 Trichinella nativa D917_00700 I 0.846
EFV58098 Trichinella spiralis EFV58098 I 0.846
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.844
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.844
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.844
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.844
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.844
Aan_R009572 Calypte anna Aan_R009572 I 0.844
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.841
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.841
VDR Tursiops truncatus ENSTTRG00000012578 I 0.841
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.841
VDR Otolemur garnettii ENSOGAG00000005480 I 0.841
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.841
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.841
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.841
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.841
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.841
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.841
VDR Sus scrofa ENSSSCG00000020864 I 0.841
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.841
VDR Tupaia belangeri ENSTBEG00000005717 I 0.841
VDR Equus caballus ENSECAG00000015822 I 0.841
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.841
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.841
VDR Felis catus ENSFCAG00000024594 I 0.841
VDR Gorilla gorilla ENSGGOG00000016473 I 0.841
VDR Homo sapiens ENSG00000111424 D 0.841
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.841
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.841
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.841
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.841
VDR Bos taurus ENSBTAG00000016414 I 0.841
VDR Canis familiaris ENSCAFG00000009103 I 0.841
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.841
VDR Loxodonta africana ENSLAFG00000006418 I 0.841
VDR Callithrix jacchus ENSCJAG00000015018 I 0.841
VDR Microcebus murinus ENSMICG00000009017 I 0.841
VDR Macaca mulatta ENSMMUG00000006727 I 0.841
VDR Myotis lucifugus ENSMLUG00000000912 I 0.841
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.841
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.841
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.841
Vdr Mus musculus ENSMUSG00000022479 D 0.841
NR1I2 Equus caballus ENSECAG00000008728 I 0.840
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.840
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.840
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.840
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.840
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.840
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.840
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.840
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.840
NR1I2 Felis catus ENSFCAG00000006092 I 0.840
NR1I2 Homo sapiens ENSG00000144852 D 0.840
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.840
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.840
NR1I2 Bos taurus ENSBTAG00000019557 I 0.830
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.830
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.830
ACOC_0001278301 Angiostrongylus costaricensis ACOC_0001278301 I 0.829
NBR_0001980401 Nippostrongylus brasiliensis NBR_0001980401 I 0.824
TELCIR_16351 Teladorsagia circumcincta TELCIR_16351 I 0.824
HCOI00910600 Haemonchus contortus HCOI00910600 I 0.823
HCOI00433800 Haemonchus contortus HCOI00433800 I 0.823
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.821
NECAME_11142 Necator americanus NECAME_11142 I 0.821
ANCCAN_11234 Ancylostoma caninum ANCCAN_11234 I 0.821
ENSONIG00000014385 Oreochromis niloticus ENSONIG00000014385 I 0.819
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.817
nhr-8 Caenorhabditis elegans WBGene00003607 I 0.816
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.814
DICVIV_05958 Dictyocaulus viviparus DICVIV_05958 I 0.806
GJ20887 Drosophila virilis FBgn0208023 I 0.805
GI21285 Drosophila mojavensis FBgn0144015 I 0.805
nr1i2 Danio rerio ENSDARG00000029766 I 0.805
GH20948 Drosophila grimshawi FBgn0128410 I 0.805
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.804
CJA16298 Caenorhabditis japonica CJA16298 N 0.804
TriadG21656 Trichoplax adhaerens TriadG21656 I 0.801
CRE12534 Caenorhabditis remanei CRE12534 I 0.798
CRE05362 Caenorhabditis remanei CRE05362 I 0.798
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.797
CGOC_0001446101 Cylicostephanus goldi CGOC_0001446101 I 0.797
L893_g6815 Steinernema glaseri L893_g6815 I 0.794
L889_g17804 Steinernema feltiae L889_g17804 I 0.794
L596_g17693 Steinernema carpocapsae L596_g17693 I 0.794
L898_g14201 Steinernema monticolum L898_g14201 I 0.794
L892_g24092 Steinernema scapterisci L892_g24092 I 0.794
ANCCAN_22289 Ancylostoma caninum ANCCAN_22289 I 0.792
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.791
Bm2982 Brugia malayi Bm2982 I 0.789
nAv.1.0.1.g02667 Acanthocheilonema viteae nAv.1.0.1.g02667 I 0.789
BTMF_0001180601 Brugia timori BTMF_0001180601 I 0.789
DME_0000391501 Dracunculus medinensis DME_0000391501 I 0.789
TELCIR_04193 Teladorsagia circumcincta TELCIR_04193 I 0.789
OFLC_0000511401 Onchocerca flexuosa OFLC_0000511401 I 0.789
WUBG_00356 Wuchereria bancrofti WUBG_00356 I 0.789
WBGene00245913 Onchocerca volvulus WBGene00245913 I 0.789
EEL_0000192101 Elaeophora elaphi EEL_0000192101 I 0.789
nLs.2.1.2.g05295 Litomosoides sigmodontis nLs.2.1.2.g05295 I 0.789
LOAG_16842 Loa loa LOAG_16842 I 0.789
nOo.2.0.1.g07306 Onchocerca ochengi nOo.2.0.1.g07306 I 0.789
GPUH_0000103801 Gongylonema pulchrum GPUH_0000103801 I 0.789
CBG05944 Caenorhabditis briggsae CBG05944 I 0.788
ASU_11275 Ascaris suum ASU_11275 I 0.787
TCLT_0000569201 Thelazia callipaeda TCLT_0000569201 I 0.787
TCNE_0001577801 Toxocara canis TCNE_0001577801 I 0.787
nRc.2.0.1.g36086 Romanomermis culicivorax nRc.2.0.1.g36086 I 0.786
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.784
HPBE_0002060301 Heligmosomoides bakeri HPBE_0002060301 I 0.780
GG10830 Drosophila erecta FBgn0103135 I 0.775
GD10334 Drosophila simulans FBgn0182106 I 0.771
GL16258 Drosophila persimilis FBgn0153862 I 0.771
GF13818 Drosophila ananassae FBgn0090845 I 0.771
EcR Drosophila melanogaster FBgn0000546 D 0.771
GM16480 Drosophila sechellia FBgn0171395 I 0.771
GK21996 Drosophila willistoni FBgn0223981 I 0.771
GA24101 Drosophila pseudoobscura FBgn0245500 I 0.771
EcR Drosophila pseudoobscura FBgn0243551 I 0.771
GE19426 Drosophila yakuba FBgn0236769 I 0.771
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.764
L893_g24576 Steinernema glaseri L893_g24576 I 0.764
ENSAMXG00000019070 Astyanax mexicanus ENSAMXG00000019070 I 0.763
rorc Danio rerio ENSDARG00000087195 I 0.763
HCOI00283900 Haemonchus contortus HCOI00283900 I 0.759
HCOI00567800 Haemonchus contortus HCOI00567800 I 0.759
AALB010791 Anopheles albimanus AALB010791 I 0.758
ACOM026429 Anopheles coluzzii ACOM026429 I 0.758
AARA003299 Anopheles arabiensis AARA003299 I 0.758
AGAP012211 Anopheles gambiae AGAP012211 I 0.758
LCUP007589 Lucilia cuprina LCUP007589 I 0.758
HMEL012265 Heliconius melpomene HMEL012265 I 0.758
CpipJ_CPIJ002963 Culex pipiens CpipJ_CPIJ002963 I 0.758
KGM_08219 Danaus plexippus KGM_08219 I 0.758
CPIJ002963 Culex quinquefasciatus CPIJ002963 I 0.758
ACUA000806 Anopheles culicifacies ACUA000806 I 0.758
BGIBMGA006767 Bombyx mori BGIBMGA006767 I 0.758
AATE015478 Anopheles atroparvus AATE015478 I 0.758
ADAC008672 Anopheles darlingi ADAC008672 I 0.758
ADIR001886 Anopheles dirus ADIR001886 I 0.758
AQUA002870 Anopheles quadriannulatus AQUA002870 I 0.758
ASTEI02489 Anopheles stephensi ASTEI02489 I 0.758
MDOA013387 Musca domestica MDOA013387 I 0.758
AMIN006955 Anopheles minimus AMIN006955 I 0.758
ECR Aedes aegypti AAEL009600 I 0.758
AFAF021556 Anopheles farauti AFAF021556 I 0.758
AFUN015736 Anopheles funestus AFUN015736 I 0.758
AEPI000843 Anopheles epiroticus AEPI000843 I 0.758
AMEM018998 Anopheles merus AMEM018998 I 0.758
PPAI003337 Phlebotomus papatasi PPAI003337 I 0.757
CBN28114 Caenorhabditis brenneri CBN28114 N 0.753
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.750
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.749
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.749
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.749
Ppa-sex-1 Pristionchus pacificus PPA19965 I 0.749