NR1I2 (Pteropus vampyrus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSPVAG00000000884 T304639_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.981 0.929
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.981 0.929
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.981 0.929
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.981 0.929
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.963 0.914
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.927 0.629
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.918 0.643
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.901 0.614
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.901 0.614
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.901 0.614
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.901 0.614
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.901 0.614
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.901 0.614
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.901 0.614
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.901 0.614
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.901 0.614
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.750 0.586
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.750 0.586
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.750 0.586
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.750 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000000837 Nuclear receptor 70 140

Links

Other Nuclear receptor family TFs
Other Pteropus vampyrus TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.981
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.981
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.981
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.981
NR1I2 Felis catus ENSFCAG00000006092 I 0.981
NR1I2 Homo sapiens ENSG00000144852 D 0.981
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.981
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.981
NR1I2 Equus caballus ENSECAG00000008728 I 0.981
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.981
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.981
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.981
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.979
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.979
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.972
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.972
NR1I2 Bos taurus ENSBTAG00000019557 I 0.970
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.969
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.966
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.965
nr1i2 Danio rerio ENSDARG00000029766 I 0.964
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.963
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.963
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.963
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.963
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.963
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.955
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.955
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.954
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.954
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.953
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.952
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.947
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.942
vdr-a Ciona intestinalis ENSCING00000020740 I 0.942
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.941
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.930
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.930
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.929
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.929
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.928
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.928
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.928
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.928
vdra Takifugu rubripes ENSTRUG00000011907 I 0.928
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.928
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.928
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.928
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.928
vdr Oryzias latipes ENSORLG00000016402 I 0.928
vdralpha Oryzias latipes ENSORLG00000001063 I 0.928
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.928
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.928
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.928
VDR Anolis carolinensis ENSACAG00000013485 I 0.928
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.928
vdrb Danio rerio ENSDARG00000070721 I 0.928
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.928
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.928
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.927
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.927
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.927
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.918
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.918
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.914
vdr.S Xenopus laevis XB-GENE-864847 I 0.913
vdr Xenopus tropicalis XB-GENE-486505 I 0.910
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.907
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.906
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.905
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.903
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.903
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.903
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.903
Aan_R009572 Calypte anna Aan_R009572 I 0.903
VDR Tupaia belangeri ENSTBEG00000005717 I 0.901
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.901
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.901
VDR Loxodonta africana ENSLAFG00000006418 I 0.901
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.901
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.901
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.901
VDR Canis familiaris ENSCAFG00000009103 I 0.901
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.901
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.901
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.901
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.901
VDR Bos taurus ENSBTAG00000016414 I 0.901
VDR Equus caballus ENSECAG00000015822 I 0.901
VDR Callithrix jacchus ENSCJAG00000015018 I 0.901
VDR Tursiops truncatus ENSTTRG00000012578 I 0.901
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.901
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.901
VDR Sus scrofa ENSSSCG00000020864 I 0.901
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.901
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.901
VDR Felis catus ENSFCAG00000024594 I 0.901
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.901
VDR Homo sapiens ENSG00000111424 D 0.901
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.901
VDR Otolemur garnettii ENSOGAG00000005480 I 0.901
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.901
VDR Microcebus murinus ENSMICG00000009017 I 0.901
VDR Myotis lucifugus ENSMLUG00000000912 I 0.901
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.901
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.901
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.901
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.901
VDR Gorilla gorilla ENSGGOG00000016473 I 0.901
Vdr Mus musculus ENSMUSG00000022479 D 0.901
VDR Macaca mulatta ENSMMUG00000006727 I 0.901
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.899
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.894
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.887
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.883
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.874
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.871
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.871
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.859
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.840
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.837
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.830
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.821
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.820
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.815
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.814
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.811
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.795
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.792
NR1I3 Sorex araneus ENSSARG00000002684 I 0.792
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.791
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.791
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.782
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.780
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.773
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.771
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.761
NR1I3 Equus caballus ENSECAG00000020930 I 0.757
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.756
EFV58098 Trichinella spiralis EFV58098 I 0.756
D917_00700 Trichinella nativa D917_00700 I 0.756
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.756
NR1I3 Bos taurus ENSBTAG00000009215 I 0.756
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.756
D918_02615 Trichuris suis D918_02615 I 0.756
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.756
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.754
SNAPOd2T00013215001 Oikopleura dioica SNAPOd2T00013215001 I 0.750
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.750
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.750
NR1I3 Homo sapiens ENSG00000143257 D 0.750
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.750
SNAPOd2T00013219001 Oikopleura dioica SNAPOd2T00013219001 I 0.750
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.746
LotgiG170342 Lottia gigantea LotgiG170342 I 0.745
SMUV_0000490601 Syphacia muris SMUV_0000490601 I 0.745