Carubv10017660m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10017660m.g T142729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.827 0.978
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.827 0.957
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.717
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017660m C2H2 ZF 201 223
Carubv10017660m C2H2 ZF 254 276

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.799
29661.m000908 Ricinus communis 29661.m000908 I 0.776
30170.m013751 Ricinus communis 30170.m013751 I 0.800
30174.m008818 Ricinus communis 30174.m008818 I 0.797
ZAT1 Arabidopsis thaliana AT1G02030 D 0.802
ZAT4 Arabidopsis thaliana AT2G45120 D 0.827
AZF2 Arabidopsis thaliana AT3G19580 D 0.799
ZAT9 Arabidopsis thaliana AT3G60580 D 0.827
AT5G03510 Arabidopsis thaliana AT5G03510 D
AT5G04390 Arabidopsis thaliana AT5G04390 D
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.776
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.786
Bo1g113530 Brassica oleracea Bo1g113530 I 0.799
Bo3g037560 Brassica oleracea Bo3g037560 I 0.803
Bo4g104940 Brassica oleracea Bo4g104940 I 0.803
Bo4g195370 Brassica oleracea Bo4g195370 I 0.803
Bo5g113850 Brassica oleracea Bo5g113850 I 0.799
Bo6g077190 Brassica oleracea Bo6g077190 I 0.803
Bo8g095300 Brassica oleracea Bo8g095300 I 0.803
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.827
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.799
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.827
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.802
Bra000372 Brassica rapa Bra000372 I 0.803
Bra003422 Brassica rapa Bra003422 I 0.803
Bra007545 Brassica rapa Bra007545 I 0.803
Bra014483 Brassica rapa Bra014483 I 0.803
Bra022436 Brassica rapa Bra022436 I 0.799
Bra038219 Brassica rapa Bra038219 I 0.799
Bra040325 Brassica rapa Bra040325 I 0.803
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.769
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.786
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.822
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.827
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.799
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.799
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.822
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.800
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.788
cassava15802.m1 Manihot esculenta cassava15802.m1 I
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.797
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.799
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.799
Ca_01586 Cicer arietinum Ca_01586 I 0.799
Ca_05641 Cicer arietinum Ca_05641 I 0.775
Ca_18364 Cicer arietinum Ca_18364 I 0.799
Ca_23672 Cicer arietinum Ca_23672 I 0.811
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.799
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.799
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.799
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.811
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.799
Eucgr.D02083 Eucalyptus grandis Eucgr.D02083 N
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.796
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.775
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.799
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.777
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.821
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.775
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.799
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.827
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.799
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.806
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.811
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.811
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.799
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.799
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.775
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.799
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.799
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.821
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.799
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.820
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.799
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.796
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.799
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.799
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.786
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.792
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.786
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.776
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.768
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.759
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.816
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.800
MDP0000198015 Malus domestica MDP0000198015 I 0.799
MDP0000319225 Malus domestica MDP0000319225 I 0.799
MDP0000573176 Malus domestica MDP0000573176 I 0.799
MDP0000762756 Malus domestica MDP0000762756 I 0.799
mgf006006m Mimulus guttatus mgf006006m I 0.800
mgf017082m Mimulus guttatus mgf017082m I 0.782
mgf021094m Mimulus guttatus mgf021094m I 0.787
mgf021789m Mimulus guttatus mgf021789m I 0.760
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.769
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.811
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.800
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.799
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.799
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.812
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
OBART02G26700 Oryza barthii OBART02G26700 I 0.776
OBART04G21020 Oryza barthii OBART04G21020 I 0.786
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.776
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.776
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.786
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.776
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.786
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.786
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.799
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.799
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.811
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.776
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.786
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.776
OS02G0659500 Oryza sativa OS02G0659500 I 0.776
OS04G0552700 Oryza sativa OS04G0552700 I 0.786
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.786
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.799
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.799
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.786
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.797
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.773
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.789
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.799
PK10188.1 Cannabis sativa PK10188.1 I 0.799
Pm005390 Prunus mume Pm005390 I 0.799
Pm021284 Prunus mume Pm021284 I 0.799
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.800
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.821
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.799
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.799
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.799
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.799
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.799
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.799
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.820
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.821
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.799
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.827
Si010615m.g Setaria italica Si010615m.g I 0.786
Si023013m.g Setaria italica Si023013m.g I 0.769
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.773
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.797
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.800
TCM_007214 Theobroma cacao TCM_007214 I 0.799
TCM_034720 Theobroma cacao TCM_034720 I 0.799
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.803
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.803
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.789
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.799
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.769
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.776
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.800
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.800
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.821
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.799