PGSC0003DMG400005472 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400005472 T222154_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.709 0.667
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.709 0.667
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.689 0.630
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.689 0.630
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.642 0.537
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.622 0.704
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.622 0.704
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.612 0.519
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.612 0.519
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.612 0.519
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400013968 Homeodomain 21 74

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29815.m000499 Ricinus communis 29815.m000499 I
29822.m003500 Ricinus communis 29822.m003500 I 0.709
29983.m003123 Ricinus communis 29983.m003123 I
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.644
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.642
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.689
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.612
HAT7 Arabidopsis thaliana AT5G15150 I 0.708
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.610
Bo12274s010 Brassica oleracea Bo12274s010 I 0.672
Bo1g158730 Brassica oleracea Bo1g158730 I 0.689
Bo2g005230 Brassica oleracea Bo2g005230 I 0.623
Bo2g012410 Brassica oleracea Bo2g012410 I 0.708
Bo3g002560 Brassica oleracea Bo3g002560 I 0.612
Bo3g010120 Brassica oleracea Bo3g010120 I 0.708
Bo4g034490 Brassica oleracea Bo4g034490 I
Bo9g165360 Brassica oleracea Bo9g165360 I 0.708
Bo9g181720 Brassica oleracea Bo9g181720 I 0.612
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.689
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.612
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.610
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.708
Bra005259 Brassica rapa Bra005259 I
Bra006285 Brassica rapa Bra006285 I 0.708
Bra008717 Brassica rapa Bra008717 I 0.708
Bra009510 Brassica rapa Bra009510 I 0.612
Bra023506 Brassica rapa Bra023506 I 0.708
Bra028820 Brassica rapa Bra028820 I 0.623
Bra039135 Brassica rapa Bra039135 I 0.689
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.632
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.612
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.708
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.689
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.641
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.708
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.612
Carubv10003464m.g Capsella rubella Carubv10003464m.g I
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.689
Carubv10024148m.g Capsella rubella Carubv10024148m.g I
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.641
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.709
cassava14646.m1 Manihot esculenta cassava14646.m1 I
cassava34082.m1 Manihot esculenta cassava34082.m1 I
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.709
Ca_10527 Cicer arietinum Ca_10527 I 0.709
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.709
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.647
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.709
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I
Cla010510 Citrullus lanatus Cla010510 I 0.709
Cla018017 Citrullus lanatus Cla018017 I 0.621
Cla018641 Citrullus lanatus Cla018641 I 0.612
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.612
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.709
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.621
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.600
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.615
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.709
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.731
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.709
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.683
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.612
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.708
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.610
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.603
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.612
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.709
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.602
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.651
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.709
GLYMA10G07440 Glycine max GLYMA10G07440 I
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.676
GLYMA13G21330 Glycine max GLYMA13G21330 I
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.713
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.709
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.699
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.631
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.709
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.604
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.605
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.708
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.708
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.708
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.686
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.616
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.631
Lus10008641.g Linum usitatissimum Lus10008641.g I
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.631
Lus10035583.g Linum usitatissimum Lus10035583.g I
MDP0000119544 Malus domestica MDP0000119544 I
MDP0000124827 Malus domestica MDP0000124827 I 0.709
MDP0000134241 Malus domestica MDP0000134241 I
MDP0000146339 Malus domestica MDP0000146339 I 0.630
MDP0000737128 Malus domestica MDP0000737128 I 0.709
MDP0000738604 Malus domestica MDP0000738604 I
MDP0000909160 Malus domestica MDP0000909160 I 0.630
mgf013301m Mimulus guttatus mgf013301m I 0.609
mgf019824m Mimulus guttatus mgf019824m I 0.662
mgf022748m Mimulus guttatus mgf022748m I 0.623
mgf025174m Mimulus guttatus mgf025174m I
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.630
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.709
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.647
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.709
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.605
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.605
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.623
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.619
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I
PK15535.1 Cannabis sativa PK15535.1 I 0.602
PK20392.1 Cannabis sativa PK20392.1 D 0.709
Pm011328 Prunus mume Pm011328 I 0.631
Pm015861 Prunus mume Pm015861 I 0.709
Pm018314 Prunus mume Pm018314 I 0.603
Pm026270 Prunus mume Pm026270 I
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.631
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.631
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.709
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.603
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.631
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.709
SapurV1A.0118s0340 Salix purpurea SapurV1A.0118s0340 N
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.631
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.709
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.709
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.605
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.689
Si030983m.g Setaria italica Si030983m.g I 0.605
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.623
TCM_018470 Theobroma cacao TCM_018470 I 0.709
TCM_022391 Theobroma cacao TCM_022391 I
TCM_031644 Theobroma cacao TCM_031644 I 0.631
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.708
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.612
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.689
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.613
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.599
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.618
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.704
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.631