MDP0000822986 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000822986 T247141_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000822986 LOB 76 174

Links

Other LOB family TFs
Other Malus domestica TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30111.m000703 Ricinus communis 30111.m000703 I 0.879
30169.m006340 Ricinus communis 30169.m006340 I 0.707
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.778
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.838
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.808
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
LBD11 Arabidopsis thaliana AT2G28500 N 0.798
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.788
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.754
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.788
Bo01039s010 Brassica oleracea Bo01039s010 N 0.808
Bo3g040220 Brassica oleracea Bo3g040220 N 0.788
Bo4g165420 Brassica oleracea Bo4g165420 N 0.798
Bo5g008590 Brassica oleracea Bo5g008590 N 0.838
Bo8g112780 Brassica oleracea Bo8g112780 N 0.798
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.828
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.818
Bra000491 Brassica rapa Bra000491 N 0.788
Bra011942 Brassica rapa Bra011942 N 0.798
Bra018675 Brassica rapa Bra018675 N 0.838
Bra031599 Brassica rapa Bra031599 N 0.788
Bra035698 Brassica rapa Bra035698 N 0.798
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.737
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.818
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.808
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.828
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.808
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.879
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.809
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.889
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.889
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.879
Ca_02507 Cicer arietinum Ca_02507 N 0.808
Ca_04287 Cicer arietinum Ca_04287 I 0.869
Ca_14605 Cicer arietinum Ca_14605 I 0.859
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.848
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.879
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.798
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.808
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.869
Cla000556 Citrullus lanatus Cla000556 I 0.848
Cla005133 Citrullus lanatus Cla005133 N 0.828
Cla005134 Citrullus lanatus Cla005134 N 0.859
Cla013678 Citrullus lanatus Cla013678 I 0.707
Cla020379 Citrullus lanatus Cla020379 I 0.859
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.889
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.838
Cucsa.062320 Cucumis sativus Cucsa.062320 N 0.714
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.838
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.788
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.838
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.737
Cucsa.341850 Cucumis sativus Cucsa.341850 N 0.714
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.795
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.879
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.762
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.828
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.761
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.828
F775_02335 Aegilops tauschii F775_02335 N 0.758
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.808
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.808
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.818
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.859
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.879
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.859
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.889
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.859
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.859
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.889
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.879
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.859
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.859
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.879
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.828
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.792
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.848
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.798
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.788
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.818
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.889
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.747
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.737
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.818
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.879
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.808
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.747
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.707
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.828
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.808
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.808
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.879
MDP0000121203 Malus domestica MDP0000121203 I 0.707
MDP0000123013 Malus domestica MDP0000123013 I 0.899
MDP0000151784 Malus domestica MDP0000151784 I 0.899
MDP0000183071 Malus domestica MDP0000183071 N 0.826
MDP0000218986 Malus domestica MDP0000218986 I 0.869
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
MDP0000318244 Malus domestica MDP0000318244 I 0.869
MDP0000319331 Malus domestica MDP0000319331 I 0.869
MDP0000879799 Malus domestica MDP0000879799 N 0.909
mgf015666m Mimulus guttatus mgf015666m N 0.828
mgf019622m Mimulus guttatus mgf019622m N 0.818
mgf022524m Mimulus guttatus mgf022524m N 0.859
mgf026046m Mimulus guttatus mgf026046m I 0.707
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.758
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.869
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.848
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.828
OB03G23270 Oryza brachyantha OB03G23270 N 0.768
OB05G11740 Oryza brachyantha OB05G11740 I 0.818
OBART03G13260 Oryza barthii OBART03G13260 N 0.788
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.788
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.788
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.717
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.788
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.707
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.788
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.717
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.729
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.784
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.869
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.798
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.879
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.788
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.808
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.788
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.754
OS03G0287400 Oryza sativa OS03G0287400 N 0.788
OS03G0659700 Oryza sativa OS03G0659700 I 0.745
OS05G0123000 Oryza sativa OS05G0123000 I 0.754
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.808
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.798
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.798
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.808
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.833
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.848
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.737
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.848
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.765
PK23777.1 Cannabis sativa PK23777.1 I 0.859
PK24688.1 Cannabis sativa PK24688.1 I 0.717
PK27389.1 Cannabis sativa PK27389.1 I 0.889
Pm000938 Prunus mume Pm000938 I 0.859
Pm011040 Prunus mume Pm011040 I 0.707
Pm018585 Prunus mume Pm018585 I 0.909
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.859
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.869
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.879
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.909
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.869
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.869
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.798
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.818
Si024430m.g Setaria italica Si024430m.g N 0.788
Si037280m.g Setaria italica Si037280m.g N 0.778
Si037583m.g Setaria italica Si037583m.g I 0.707
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.818
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.848
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.859
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.795
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.859
TCM_032557 Theobroma cacao TCM_032557 I 0.707
TCM_041094 Theobroma cacao TCM_041094 I 0.879
TCM_043081 Theobroma cacao TCM_043081 I 0.859
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.828
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.798
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.758
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.758
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.758
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.737
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.758
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.838
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.848
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.889
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.758
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.727
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.788
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.747
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.707
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.770
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.727
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.717
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.717