Bo6g075950 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo6g075950 T247992_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.965 0.857
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.965 0.857
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g075950.1 MADF 37 123

Links

Other MADF family TFs
Other Brassica oleracea TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001628 Ricinus communis 29900.m001628 I 0.868
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.845
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.965
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.856
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.856
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.967
Bra003346 Brassica rapa Bra003346 I 0.971
Bra007407 Brassica rapa Bra007407 I 0.951
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.854
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.925
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.925
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.868
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.868
Ca_00394 Cicer arietinum Ca_00394 I 0.903
Ca_19877 Cicer arietinum Ca_19877 I 0.882
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.876
Cla002288 Citrullus lanatus Cla002288 I 0.829
Cla009854 Citrullus lanatus Cla009854 I 0.877
Cla019967 Citrullus lanatus Cla019967 I 0.841
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.841
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.841
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.899
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.917
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.964
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.939
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.842
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.903
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.887
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.903
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.902
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.842
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.890
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.904
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.890
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.898
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.874
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.877
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.840
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.840
MDP0000301451 Malus domestica MDP0000301451 I 0.936
mgf000047m Mimulus guttatus mgf000047m I 0.825
mgf006505m Mimulus guttatus mgf006505m I 0.832
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.923
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.878
OBART05G25610 Oryza barthii OBART05G25610 I 0.856
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.856
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.856
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.856
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.842
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.876
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.856
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.856
OS05G0560600 Oryza sativa OS05G0560600 I 0.856
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.842
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.842
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.915
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.835
PK27986.1 Cannabis sativa PK27986.1 I 0.924
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.897
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.853
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.912
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.882
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.884
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.901
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.842
Si022565m.g Setaria italica Si022565m.g I 0.842
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.835
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.940
TCM_029695 Theobroma cacao TCM_029695 I 0.902
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.970
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.877
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.905