cassava2218.valid.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava2218.valid.m1 T250462_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.869 0.613
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.869 0.613
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2218.valid.m1 MADF 35 117

Links

Other MADF family TFs
Other Manihot esculenta TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000741 Ricinus communis 29814.m000741 I 0.843
29900.m001628 Ricinus communis 29900.m001628 I 0.971
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.836
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.869
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.870
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.870
Bo6g075950 Brassica oleracea Bo6g075950 I 0.868
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.869
Bra003346 Brassica rapa Bra003346 I 0.868
Bra007407 Brassica rapa Bra007407 I 0.813
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.842
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.869
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.869
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.969
Ca_00394 Cicer arietinum Ca_00394 I 0.910
Ca_02494 Cicer arietinum Ca_02494 N 0.820
Ca_19877 Cicer arietinum Ca_19877 I 0.918
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.903
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.821
Cla002288 Citrullus lanatus Cla002288 I 0.892
Cla009854 Citrullus lanatus Cla009854 I 0.893
Cla019967 Citrullus lanatus Cla019967 I 0.914
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.866
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.914
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.914
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.902
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.919
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.867
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.892
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.872
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.910
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.872
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.910
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.910
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.856
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.896
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.888
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.890
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.914
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.842
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.905
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.831
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.934
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.908
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.902
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.902
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.902
MDP0000301451 Malus domestica MDP0000301451 I 0.903
mgf000047m Mimulus guttatus mgf000047m I 0.908
mgf001239m Mimulus guttatus mgf001239m N 0.878
mgf006505m Mimulus guttatus mgf006505m I 0.893
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.878
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.904
OBART05G25610 Oryza barthii OBART05G25610 I 0.870
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.870
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.870
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.870
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.856
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.903
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.821
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.870
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.870
OS05G0560600 Oryza sativa OS05G0560600 I 0.870
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.856
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.856
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.898
PK27986.1 Cannabis sativa PK27986.1 I 0.886
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.906
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.865
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.842
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.895
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.896
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.818
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.902
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.842
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.856
Si022565m.g Setaria italica Si022565m.g I 0.856
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.917
TCM_029695 Theobroma cacao TCM_029695 I 0.912
TCM_042467 Theobroma cacao TCM_042467 N 0.848
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.869
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.843
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.940
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.915