LjSGA_057783.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_057783.1 T259387_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_057783.1 MADS box 1 28

Links

Other MADS box family TFs
Other Lotus japonicus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g104810 Brassica oleracea Bo2g104810 I 0.741
Bo5g145000 Brassica oleracea Bo5g145000 I 0.704
Bo9g078450 Brassica oleracea Bo9g078450 I 0.741
Bra018490 Brassica rapa Bra018490 I 0.778
Bra029469 Brassica rapa Bra029469 I 0.741
Ca_13275 Cicer arietinum Ca_13275 I 0.852
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.815
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.741
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.741
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.741
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.778
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.778
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.778
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.778
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.889
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.704
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.704
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.889
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.815
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.704
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.704
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.778
MDP0000123878 Malus domestica MDP0000123878 I 0.815
MDP0000152718 Malus domestica MDP0000152718 I 0.704
MDP0000159587 Malus domestica MDP0000159587 I 0.704
MDP0000726295 Malus domestica MDP0000726295 I 0.815
MDP0000846004 Malus domestica MDP0000846004 I 0.741
MDP0000925348 Malus domestica MDP0000925348 I 0.704
MTR_2g035610 Medicago truncatula MTR_2g035610 N 0.704
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.852
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.852
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.889
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.778
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.778
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.815
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.815
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.741
TCM_026842 Theobroma cacao TCM_026842 I 0.778
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.741
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.741
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.741
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.741
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.852