TRIREDRAFT_69349 (Trichoderma reesei)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 TRIREDRAFT_69349 T318834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.673 0.500
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.673 0.500
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.673 0.500
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.673 0.500
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.673 0.500
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.658 0.449
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.653 0.397
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.653 0.397
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.651 0.397
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.651 0.397
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.651 0.385
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.651 0.385
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.651 0.385
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.651 0.410
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.651 0.397
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.651 0.397
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.651 0.397
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.651 0.397
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.651 0.397
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.651 0.397
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.651 0.397
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.651 0.397
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.651 0.397
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.651 0.397
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.651 0.385
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.651 0.385
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.651 0.385
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.651 0.385
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.651 0.385
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.651 0.385
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.651 0.385
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.651 0.385
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.651 0.385
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.651 0.385
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.651 0.385
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGR44922 RFX 193 270

Links

Other RFX family TFs
Other Trichoderma reesei TFs

383 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I
CBG06601 Caenorhabditis briggsae CBG06601 I
CBG06611 Caenorhabditis briggsae CBG06611 I
CBG09320 Caenorhabditis briggsae CBG09320 I
CBG09567 Caenorhabditis briggsae CBG09567 I
CBG20727 Caenorhabditis briggsae CBG20727 I
CBG20729 Caenorhabditis briggsae CBG20729 I
CBG22870 Caenorhabditis briggsae CBG22870 I
CBN13569 Caenorhabditis brenneri CBN13569 I
CBN21486 Caenorhabditis brenneri CBN21486 I
CBN23838 Caenorhabditis brenneri CBN23838 I
CBN28290 Caenorhabditis brenneri CBN28290 I
CJA09697 Caenorhabditis japonica CJA09697 I
CJA28065 Caenorhabditis japonica CJA28065 I
CRE08691 Caenorhabditis remanei CRE08691 I
CRE15644 Caenorhabditis remanei CRE15644 I
CRE15675 Caenorhabditis remanei CRE15675 I
CRE18430 Caenorhabditis remanei CRE18430 I
CRE30948 Caenorhabditis remanei CRE30948 I
CRE31070 Caenorhabditis remanei CRE31070 I
GPLIN_001629700 Globodera pallida GPLIN_001629700 N
HCOI00483700 Haemonchus contortus HCOI00483700 I
HCOI01190000 Haemonchus contortus HCOI01190000 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I
L596_g14532 Steinernema carpocapsae L596_g14532 I
L596_g14536 Steinernema carpocapsae L596_g14536 I
L596_g14588 Steinernema carpocapsae L596_g14588 I
L889_g6696 Steinernema feltiae L889_g6696 I
L889_g6792 Steinernema feltiae L889_g6792 I
L889_g6798 Steinernema feltiae L889_g6798 I
L889_g6804 Steinernema feltiae L889_g6804 I
L889_g8185 Steinernema feltiae L889_g8185 I
L892_g10843 Steinernema scapterisci L892_g10843 I
L892_g2782 Steinernema scapterisci L892_g2782 I
L893_g18993 Steinernema glaseri L893_g18993 I
L893_g27930 Steinernema glaseri L893_g27930 I
L898_g12799 Steinernema monticolum L898_g12799 I
L898_g19012 Steinernema monticolum L898_g19012 I
L898_g19019 Steinernema monticolum L898_g19019 I
L898_g21763 Steinernema monticolum L898_g21763 I
L898_g3512 Steinernema monticolum L898_g3512 I
L898_g3514 Steinernema monticolum L898_g3514 I
L898_g4012 Steinernema monticolum L898_g4012 I
L898_g4013 Steinernema monticolum L898_g4013 I
L898_g4015 Steinernema monticolum L898_g4015 N
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I
nhr-54 Caenorhabditis elegans WBGene00003644 I
nhr-102 Caenorhabditis elegans WBGene00003692 I
nhr-170 Caenorhabditis elegans WBGene00008309 I
nhr-213 Caenorhabditis elegans WBGene00011520 I
nhr-218 Caenorhabditis elegans WBGene00011750 I
nhr-231 Caenorhabditis elegans WBGene00012449 I
nhr-232 Caenorhabditis elegans WBGene00012494 D
nhr-178 Caenorhabditis elegans WBGene00017510 I
nhr-142 Caenorhabditis elegans WBGene00018430 D