ENSCING00000000505 (Ciona intestinalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSCING00000000505 T327682_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.423 0.300
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.423 0.300
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.423 0.300
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000000932 Sox 554 603

Links

Other Sox family TFs
Other Ciona intestinalis TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29669.m000844 Ricinus communis 29669.m000844 I 0.000
29701.m000600 Ricinus communis 29701.m000600 I 0.000
30131.m007272 Ricinus communis 30131.m007272 I 0.000
30170.m014386 Ricinus communis 30170.m014386 I 0.000
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.000
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.000
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.000
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.000
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.000
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.000
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.000
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.000
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.000
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.000
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.000
HMGB2 Arabidopsis thaliana AT1G20693 I 0.000
HMGB3 Arabidopsis thaliana AT1G20696 I 0.000
HMGB4 Arabidopsis thaliana AT2G17560 I 0.000
HMGB1 Arabidopsis thaliana AT3G51880 I 0.000
HMGB7 Arabidopsis thaliana AT5G23420 N 0.000
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.000
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.000
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.000
Bo1g006360 Brassica oleracea Bo1g006360 I 0.000
Bo2g160920 Brassica oleracea Bo2g160920 I 0.000
Bo5g030580 Brassica oleracea Bo5g030580 I 0.000
Bo7g014280 Brassica oleracea Bo7g014280 I 0.000
Bo7g061420 Brassica oleracea Bo7g061420 I 0.000
Bo7g101270 Brassica oleracea Bo7g101270 I 0.000
Bo7g117500 Brassica oleracea Bo7g117500 I 0.000
Bo8g070350 Brassica oleracea Bo8g070350 I 0.000
Bo8g081200 Brassica oleracea Bo8g081200 I 0.000
Bo9g014140 Brassica oleracea Bo9g014140 I 0.000
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.000
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.000
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.000
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.000
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.000
Bra002073 Brassica rapa Bra002073 I 0.000
Bra011624 Brassica rapa Bra011624 I 0.000
Bra017723 Brassica rapa Bra017723 I 0.000
Bra025838 Brassica rapa Bra025838 I 0.000
Bra026498 Brassica rapa Bra026498 I 0.000
Bra029371 Brassica rapa Bra029371 I 0.000
Bra037266 Brassica rapa Bra037266 I 0.000
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.415
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.000
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.000
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.000
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.000
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.000
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.000
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.000
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.000
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.000
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.000
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.000
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.000
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.000
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.000
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.000
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.000
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.000
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.000
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.000
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.000
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.000
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.000
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.000
Ca_05351 Cicer arietinum Ca_05351 I 0.000
Ca_09896 Cicer arietinum Ca_09896 I 0.000
Ca_10725 Cicer arietinum Ca_10725 I 0.000
Ca_19340 Cicer arietinum Ca_19340 I 0.000
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.000
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.000
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.000
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.000
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.000
Cla009093 Citrullus lanatus Cla009093 I 0.000
Cla009222 Citrullus lanatus Cla009222 I 0.000
Cla018386 Citrullus lanatus Cla018386 I 0.000
Cla023817 Citrullus lanatus Cla023817 I 0.000
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.000
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.000
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.000
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.000
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.000
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.000
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.000
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.000
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.000
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.000
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.000
F775_27510 Aegilops tauschii F775_27510 I 0.000
GH21151 Drosophila grimshawi FBgn0128613 N 0.000
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.000
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.000
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.000
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.000
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.000
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.000
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.000
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.426
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.426
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.000
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.000
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.429
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.000
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.000
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.000
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.000
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.000
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.000
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.000
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.000
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.000
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.415
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.000
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.000
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.000
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.000
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.000
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.000
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.000
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.000
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.000
HMEL015307 Heliconius melpomene HMEL015307 N 0.000
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.000
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.000
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.000
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.000
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.000
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.000
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.000
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.000
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.000
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.000
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.000
MDP0000205665 Malus domestica MDP0000205665 I 0.000
MDP0000275042 Malus domestica MDP0000275042 I 0.000
MDP0000362980 Malus domestica MDP0000362980 I 0.000
MDP0000607529 Malus domestica MDP0000607529 I 0.000
MDP0000757111 Malus domestica MDP0000757111 I 0.000
mgf000913m Mimulus guttatus mgf000913m I 0.000
mgf006113m Mimulus guttatus mgf006113m I 0.000
mgf008076m Mimulus guttatus mgf008076m I 0.000
mgf009124m Mimulus guttatus mgf009124m N 0.000
mgf009330m Mimulus guttatus mgf009330m I 0.000
mgf014518m Mimulus guttatus mgf014518m I 0.000
mgf016363m Mimulus guttatus mgf016363m I 0.000
mgf016608m Mimulus guttatus mgf016608m I 0.000
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.000
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.000
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.000
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.000
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.000
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.000
OB06G35870 Oryza brachyantha OB06G35870 I 0.000
OB08G10120 Oryza brachyantha OB08G10120 N 0.000
OB09G25530 Oryza brachyantha OB09G25530 I 0.000
OBART06G28090 Oryza barthii OBART06G28090 I 0.000
OBART08G00070 Oryza barthii OBART08G00070 I 0.000
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.000
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.000
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.000
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.000
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.000
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.000
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.000
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.000
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.000
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.000
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.426
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.000
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.000
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.000
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.000
OS06G0728000 Oryza sativa OS06G0728000 I 0.000
OS08G0101100 Oryza sativa OS08G0101100 I 0.000
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.000
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.000
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.000
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.000
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.000
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.000
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.000
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.000
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.000
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.000
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.000
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.000
PK03866.1 Cannabis sativa PK03866.1 I 0.000
PK11149.1 Cannabis sativa PK11149.1 I 0.000
PK29786.1 Cannabis sativa PK29786.1 I 0.000
Pm002934 Prunus mume Pm002934 I 0.000
Pm006054 Prunus mume Pm006054 I 0.000
Pm018913 Prunus mume Pm018913 I 0.000
Pm026798 Prunus mume Pm026798 I 0.000
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.000
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.000
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.000
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.000
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.000
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.000
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.000
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.000
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.000
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.000
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.000
HMG-1 Pisum sativum Q41026_PEA D 0.000
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.000
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.000
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.000
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.000
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.000
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.415
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.000
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.000
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.000
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.000
Si007288m.g Setaria italica Si007288m.g I 0.415
Si014434m.g Setaria italica Si014434m.g N 0.000
Si031512m.g Setaria italica Si031512m.g I 0.000
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.000
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.000
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.000
TCM_000068 Theobroma cacao TCM_000068 I 0.000
TCM_007659 Theobroma cacao TCM_007659 I 0.000
TCM_021706 Theobroma cacao TCM_021706 I 0.000
TCM_034406 Theobroma cacao TCM_034406 I 0.000
TCM_042534 Theobroma cacao TCM_042534 I 0.000
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.000
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.000
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.000
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.000
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.000
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.000
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.000
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.000
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.000
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.000
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.000
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.000
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.000
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.000
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.000
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.000