SapurV1A.0035s0680 (Salix purpurea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 SapurV1A.0035s0680 T334694_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.529 0.683
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.529 0.683
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0035s0680.1.p Sox 180 248
SapurV1A.0035s0680.1.p Sox 299 365
SapurV1A.0035s0680.1.p Sox 424 492

Links

Other Sox family TFs
Other Salix purpurea TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.597
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.456
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.533
HMGB13 Arabidopsis thaliana AT4G11080 D 0.529
HMGB6 Arabidopsis thaliana AT4G23800 I 0.519
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.441
Bo1g037180 Brassica oleracea Bo1g037180 I 0.501
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.514
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.519
Bra013731 Brassica rapa Bra013731 I 0.501
Bra035256 Brassica rapa Bra035256 I 0.482
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.453
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.516
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.516
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.524
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.491
cassava45417.m1 Manihot esculenta cassava45417.m1 N 0.418
Ca_05811 Cicer arietinum Ca_05811 I 0.435
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.493
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.502
Cla011101 Citrullus lanatus Cla011101 I 0.584
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.533
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.547
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.560
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.517
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.590
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.522
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.499
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.576
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.444
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.523
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.586
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.569
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.545
MDP0000268093 Malus domestica MDP0000268093 I 0.505
mgf015439m Mimulus guttatus mgf015439m I 0.510
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.466
OBART02G11160 Oryza barthii OBART02G11160 I 0.441
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.441
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.429
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.441
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.448
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.441
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.444
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.559
PK10992.1 Cannabis sativa PK10992.1 I 0.498
Pm024077 Prunus mume Pm024077 I 0.614
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.694
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.641
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.614
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.424
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.561
TCM_016416 Theobroma cacao TCM_016416 I 0.617
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.525
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.517
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.558