CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_16s0100g00380
(
Vitis vinifera
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
VIT_16s0100g00380
T006129_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.772
0.940
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.772
0.940
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.768
0.920
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.768
0.920
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.768
0.920
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.768
0.920
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.733
0.860
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.733
0.860
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.733
0.860
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.721
0.800
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.721
0.800
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.721
0.800
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.721
0.800
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.721
0.800
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.721
0.800
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.710
0.820
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.710
0.820
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.692
0.760
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_16s0100g00380.t01
AP2
55
106
PVYRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGR
Links
Other
AP2
family TFs
Other
Vitis vinifera
TFs
181 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0005s14540
Populus trichocarpa
POPTR_0005s14540
I
0.000
cassava6237.valid.m1
Manihot esculenta
cassava6237.valid.m1
I
0.000
Pm014329
Prunus mume
Pm014329
I
0.000
Ca_13295
Cicer arietinum
Ca_13295
I
0.000
VIT_14s0006g00640
Vitis vinifera
VIT_14s0006g00640
I
0.000
Eucgr.J01594
Eucalyptus grandis
Eucgr.J01594
I
0.000
PRUPE_ppa003206mg
Prunus persica
PRUPE_ppa003206mg
I
0.000
evm.TU.supercontig_116.43
Carica papaya
evm.TU.supercontig_116.43
I
0.000
evm.TU.supercontig_2.240
Carica papaya
evm.TU.supercontig_2.240
I
0.000
POPTR_0004s08890
Populus trichocarpa
POPTR_0004s08890
I
0.000
Gorai.001G089400
Gossypium raimondii
Gorai.001G089400
I
0.000
MDP0000669451
Malus domestica
MDP0000669451
I
0.000
GLYMA18G04500
Glycine max
GLYMA18G04500
I
0.000
GLYMA11G33720
Glycine max
GLYMA11G33720
I
0.000
Ciclev10017466m.g
Citrus clementina
Ciclev10017466m.g
N
0.000
AMTR_s00010p00148880
Amborella trichopoda
AMTR_s00010p00148880
N
0.000
Cucsa.006260
Cucumis sativus
Cucsa.006260
N
0.000
Cucsa.280310
Cucumis sativus
Cucsa.280310
N
0.000
mgf008289m
Mimulus guttatus
mgf008289m
N
0.000
LjT15P09.140.nc
Lotus japonicus
LjT15P09.140.nc
N
0.000
mgf025772m
Mimulus guttatus
mgf025772m
N
0.000
Aquca_091_00032
Aquilegia coerulea
Aquca_091_00032
N
0.000
Bostr.7128s0107
Boechera stricta
Bostr.7128s0107
N
0.000
PK14700.1
Cannabis sativa
PK14700.1
N
0.000
Bostr.7903s0021
Boechera stricta
Bostr.7903s0021
N
0.000
Thhalv10007323m.g
Eutrema salsugineum
Thhalv10007323m.g
N
0.000
Cagra.2235s0013
Capsella grandiflora
Cagra.2235s0013
N
0.000
Cagra.3501s0003
Capsella grandiflora
Cagra.3501s0003
N
0.000
Carubv10018534m.g
Capsella rubella
Carubv10018534m.g
N
0.000
Ciclev10011367m.g
Citrus clementina
Ciclev10011367m.g
N
0.000
Eucgr.G02163
Eucalyptus grandis
Eucgr.G02163
N
0.000
Thhalv10005482m.g
Eutrema salsugineum
Thhalv10005482m.g
N
0.000
SapurV1A.0405s0090
Salix purpurea
SapurV1A.0405s0090
N
0.000
SapurV1A.0102s0220
Salix purpurea
SapurV1A.0102s0220
N
0.000
SapurV1A.0015s0210
Salix purpurea
SapurV1A.0015s0210
N
0.000
LjT40K11.90.nc
Lotus japonicus
LjT40K11.90.nc
N
0.000
Pavir.Ib04357
Panicum virgatum
Pavir.Ib04357
N
0.000
Pavir.Ia00840
Panicum virgatum
Pavir.Ia00840
N
0.000
Gorai.002G177000
Gossypium raimondii
Gorai.002G177000
N
0.000
Lus10017626.g
Linum usitatissimum
Lus10017626.g
N
0.000
Lus10033583.g
Linum usitatissimum
Lus10033583.g
N
0.000
MDP0000237978
Malus domestica
MDP0000237978
N
0.000
orange1.1g043131m.g
Citrus sinensis
orange1.1g043131m.g
N
0.000
orange1.1g008153m.g
Citrus sinensis
orange1.1g008153m.g
N
0.000
GAI
Arabidopsis lyrata
fgenesh2_kg.1__1634__AT1G14920.1
N
0.000
SLR1
Oryza sativa
OS03G0707600
N
0.000
OB03G38380
Oryza brachyantha
OB03G38380
N
0.000
MTR_3g065980
Medicago truncatula
MTR_3g065980
N
0.000
MLOC_67940
Hordeum vulgare
MLOC_67940
N
0.000
LPERR03G26000
Leersia perrieri
LPERR03G26000
N
0.000
GLYMA08G10140
Glycine max
GLYMA08G10140
N
0.000
GLYMA05G27190
Glycine max
GLYMA05G27190
N
0.000
RGA1
Arabidopsis lyrata
fgenesh2_kg.5__65__AT2G01570.1
N
0.000
PGSC0003DMG400015692
Solanum tuberosum
PGSC0003DMG400015692
N
0.000
F775_03572
Aegilops tauschii
F775_03572
N
0.000
BRADI1G11090
Brachypodium distachyon
BRADI1G11090
N
0.000
Bra024875
Brassica rapa
Bra024875
N
0.000
Bra017443
Brassica rapa
Bra017443
N
0.000
Bo9g070200
Brassica oleracea
Bo9g070200
N
0.000
Bo7g078550
Brassica oleracea
Bo7g078550
N
0.000
RGA
Arabidopsis thaliana
AT2G01570
N
0.000
GAI
Arabidopsis thaliana
AT1G14920
N
0.000
TCM_019165
Theobroma cacao
TCM_019165
N
0.000
cassava14484.m1
Manihot esculenta
cassava14484.m1
N
0.000
29692.m000540
Ricinus communis
29692.m000540
N
0.000
28677.m000055
Ricinus communis
28677.m000055
N
0.000
Pm006304
Prunus mume
Pm006304
N
0.000
Cla020062
Citrullus lanatus
Cla020062
N
0.000
Cla003996
Citrullus lanatus
Cla003996
N
0.000
Ca_05046
Cicer arietinum
Ca_05046
N
0.000
GAI1
Vitis vinifera
VIT_01s0011g05260
N
0.000
cassava15077.m1
Manihot esculenta
cassava15077.m1
N
0.000
TCM_010965
Theobroma cacao
TCM_010965
N
0.000
Solyc11g011260.1
Solanum lycopersicum
Solyc11g011260.1
N
0.000
Si039400m.g
Setaria italica
Si039400m.g
N
0.000
Sb01g010660
Sorghum bicolor
Sb01g010660
N
0.000
PRUPE_ppa005944mg
Prunus persica
PRUPE_ppa005944mg
N
0.000
POPTR_0010s12080
Populus trichocarpa
POPTR_0010s12080
N
0.000
POPTR_0008s13090
Populus trichocarpa
POPTR_0008s13090
N
0.000