TCM_042067 (Theobroma cacao)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 TCM_042067 T021548_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY34377 B3 113 215
EOY34378 B3 113 215
EOY34379 B3 113 215

Links

Other B3 family TFs
Other Theobroma cacao TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.918
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.938
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.845
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.887
ARF10 Arabidopsis thaliana AT2G28350 I 0.918
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.897
ARF10 Oryza indica BGIOSGA016767 I 0.794
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.918
Bo1g014600 Brassica oleracea Bo1g014600 I 0.918
Bo4g071620 Brassica oleracea Bo4g071620 I 0.918
Bo7g114200 Brassica oleracea Bo7g114200 I 0.907
Bra011162 Brassica rapa Bra011162 I 0.928
Bra011955 Brassica rapa Bra011955 I 0.928
Bra024109 Brassica rapa Bra024109 I 0.897
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.928
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.938
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.896
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.720
F775_32978 Aegilops tauschii F775_32978 I 0.928
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.928
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.928
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.918
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.938
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.938
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.959
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.938
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.948
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.897
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.907
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.917
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.928
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.918
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.856
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.969
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.969
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.711
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.948
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.711
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.897
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.835
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.876
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.928
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.938
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.906
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.753
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.928
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.918
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.928
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.928
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.732
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.753
OB02G32150 Oryza brachyantha OB02G32150 I 0.896
OB04G25990 Oryza brachyantha OB04G25990 I 0.763
OB06G32920 Oryza brachyantha OB06G32920 I 0.938
OB10G20590 Oryza brachyantha OB10G20590 I 0.928
OBART02G24860 Oryza barthii OBART02G24860 I 0.760
OBART04G18910 Oryza barthii OBART04G18910 I 0.794
OBART06G25230 Oryza barthii OBART06G25230 I 0.938
OBART10G13410 Oryza barthii OBART10G13410 I 0.918
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.794
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.897
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.938
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.918
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.887
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.897
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.897
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.794
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.938
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.918
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.897
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.938
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.794
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.918
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.897
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.794
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.938
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.918
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.897
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.794
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.938
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.918
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.897
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.761
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.938
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.918
ARF8 Oryza sativa OS02G0628600 I 0.897
OS04G0519700 Oryza sativa OS04G0519700 I 0.794
ARF18 Oryza sativa OS06G0685700 I 0.938
ARF22 Oryza sativa OS10G0479900 I 0.918
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.938
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.948
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.804
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.969
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.701
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.897
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.948
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.948
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.918
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.969
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.979
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.948
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.928
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.938
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.917
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.938
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.918
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.835
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.856
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.856
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.835
Si005991m.g Setaria italica Si005991m.g I 0.938
Si009541m.g Setaria italica Si009541m.g I 0.784
Si016509m.g Setaria italica Si016509m.g I 0.907
Si034525m.g Setaria italica Si034525m.g I 0.938
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.786
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.948
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.784
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.959
TCM_022163 Theobroma cacao TCM_022163 I 0.938
TCM_029792 Theobroma cacao TCM_029792 I 0.717
TCM_035002 Theobroma cacao TCM_035002 I 0.722
TCM_043157 Theobroma cacao TCM_043157 I 0.928
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.823
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.861
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.990
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.938
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.918
Ca_02541 Cicer arietinum Ca_02541 I 0.938
Ca_08488 Cicer arietinum Ca_08488 I 0.814
Ca_17136 Cicer arietinum Ca_17136 I 0.918
Ca_17624 Cicer arietinum Ca_17624 I 0.732
Ca_26121 Cicer arietinum Ca_26121 I 0.928
Cla008883 Citrullus lanatus Cla008883 I 0.918
Cla013979 Citrullus lanatus Cla013979 I 0.907
Cla018574 Citrullus lanatus Cla018574 I 0.948
Cla022413 Citrullus lanatus Cla022413 I 0.722
Pm018533 Prunus mume Pm018533 I 0.907
Pm019126 Prunus mume Pm019126 I 0.701
Pm030120 Prunus mume Pm030120 I 0.948
Pm031275 Prunus mume Pm031275 I 0.990
27494.m000045 Ricinus communis 27494.m000045 I 0.866
27538.m000327 Ricinus communis 27538.m000327 I 0.969
29908.m005953 Ricinus communis 29908.m005953 I 0.701
30078.m002329 Ricinus communis 30078.m002329 I 0.938
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.948
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.701
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.948
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.959
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.959
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.948
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.907
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.918
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.856
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.856
mgf000336m Mimulus guttatus mgf000336m I 0.907
mgf005300m Mimulus guttatus mgf005300m I 0.928
mgf016139m Mimulus guttatus mgf016139m I 0.958
mgf024607m Mimulus guttatus mgf024607m I 0.907
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.959
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.928
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.918
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.918
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.928
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.918
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.928
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.948
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.918
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.938
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.928
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.979
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.928
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.701
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.918
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.979
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.948
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.959
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.918
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.918
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.938
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.959
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.711
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.711
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.856
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.907
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.887
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.897
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.948
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.907
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.948
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
MDP0000131481 Malus domestica MDP0000131481 I 0.979
MDP0000221322 Malus domestica MDP0000221322 I 0.979
MDP0000256621 Malus domestica MDP0000256621 I 0.701
MDP0000750392 Malus domestica MDP0000750392 I 0.918
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.918
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.948
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.938
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.928
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.916
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.938
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.928
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.887
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.979
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.701
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.938
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.938
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.907
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.928
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.918
PK10136.1 Cannabis sativa PK10136.1 I 0.722
PK13064.1 Cannabis sativa PK13064.1 I 0.928
PK13393.1 Cannabis sativa PK13393.1 I 0.804
PK17007.1 Cannabis sativa PK17007.1 I 0.948
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.732
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.948
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.797
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.921