chr1.CM0105.800.nc (Lotus japonicus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 chr1.CM0105.800.nc T024379_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0105.800.nc B3 36 141

Links

Other B3 family TFs
Other Lotus japonicus TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.733
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.851
Bo4g197410 Brassica oleracea Bo4g197410 I 0.861
Bra040478 Brassica rapa Bra040478 I 0.881
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.851
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.752
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.931
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.941
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.733
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.951
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.951
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.772
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.832
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.842
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.851
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.911
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.931
OB02G35380 Oryza brachyantha OB02G35380 I 0.861
OBART04G22880 Oryza barthii OBART04G22880 I 0.851
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.851
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.851
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.851
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.772
OS04G0581400 Oryza sativa OS04G0581400 I 0.851
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.871
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.871
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.911
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.901
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.921
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.901
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.911
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.703
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.871
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.861
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.891
TCM_005014 Theobroma cacao TCM_005014 I 0.921
TCM_015590 Theobroma cacao TCM_015590 I 0.921
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.762
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.851
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.851
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.911
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.861
Ca_01368 Cicer arietinum Ca_01368 I 0.921
Ca_25633 Cicer arietinum Ca_25633 I 0.723
Cla006845 Citrullus lanatus Cla006845 I 0.802
Cla017937 Citrullus lanatus Cla017937 I 0.713
Pm024248 Prunus mume Pm024248 I 0.911
30068.m002615 Ricinus communis 30068.m002615 I 0.861
30076.m004471 Ricinus communis 30076.m004471 I 0.951
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.921
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.901
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.851
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.832
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.703
mgf023686m Mimulus guttatus mgf023686m I 0.743
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.881
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.752
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.832
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.713
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.762
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.762
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.822
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.723
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.921
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.931
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.871
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.911
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.733
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.931
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.921
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.911
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.713
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.871
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.941
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.723
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.921
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.911
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.881
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.871
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.723
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.921
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.931
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.723
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.762
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.911
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.901
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.911
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.832
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.752
PK04952.1 Cannabis sativa PK04952.1 I 0.713
PK11025.1 Cannabis sativa PK11025.1 I 0.901
PK21157.1 Cannabis sativa PK21157.1 I 0.842
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.960
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.782
NGA3 Arabidopsis thaliana AT1G01030 N 0.842
ARF31 Arabidopsis thaliana AT2G36080 N 0.703
NGA1 Arabidopsis thaliana AT2G46870 N 0.871
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.743
NGA2 Arabidopsis thaliana AT3G61970 N 0.822
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.762
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.832
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.861
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.782
Bo01079s020 Brassica oleracea Bo01079s020 N 0.703
Bo3g001110 Brassica oleracea Bo3g001110 N 0.822
Bo3g003800 Brassica oleracea Bo3g003800 N 0.713
Bo3g039420 Brassica oleracea Bo3g039420 N 0.881
Bo3g064320 Brassica oleracea Bo3g064320 N 0.733
Bo4g006900 Brassica oleracea Bo4g006900 N 0.861
Bo4g099000 Brassica oleracea Bo4g099000 N 0.822
Bo5g002790 Brassica oleracea Bo5g002790 N 0.832
Bo5g136360 Brassica oleracea Bo5g136360 N 0.723
Bo6g079210 Brassica oleracea Bo6g079210 N 0.832
Bo8g097490 Brassica oleracea Bo8g097490 N 0.842
Bo9g176470 Brassica oleracea Bo9g176470 N 0.743
Bra000434 Brassica rapa Bra000434 N 0.851
Bra001411 Brassica rapa Bra001411 N 0.733
Bra003482 Brassica rapa Bra003482 N 0.812
Bra004501 Brassica rapa Bra004501 N 0.861
Bra005886 Brassica rapa Bra005886 N 0.713
Bra007646 Brassica rapa Bra007646 N 0.842
Bra014415 Brassica rapa Bra014415 N 0.832
Bra017262 Brassica rapa Bra017262 N 0.703
Bra030497 Brassica rapa Bra030497 N 0.832
Bra033294 Brassica rapa Bra033294 N 0.812
Bra034828 Brassica rapa Bra034828 N 0.723
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.782
F775_04153 Aegilops tauschii F775_04153 N 0.733
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.842
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.871
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.871
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.832
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.762
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.851
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.802
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.812
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.812
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.851
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.713
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.743
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.707
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.792
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.733
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.713
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.871
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.842
LPERR07G08550 Leersia perrieri LPERR07G08550 N 0.703
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.752
MLOC_47091 Hordeum vulgare MLOC_47091 N 0.703
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.743
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.723
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.733
OB03G11610 Oryza brachyantha OB03G11610 N 0.871
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
OB12G13420 Oryza brachyantha OB12G13420 N 0.713
OBART02G28100 Oryza barthii OBART02G28100 N 0.832
OBART03G01650 Oryza barthii OBART03G01650 N 0.861
OBART10G17010 Oryza barthii OBART10G17010 N 0.782
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.832
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.861
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.782
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.832
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.861
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.782
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.713
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.861
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.782
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.832
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.832
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.861
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.782
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.703
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.832
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.861
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.782
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.832
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.782
OS02G0683500 Oryza sativa OS02G0683500 N 0.832
OS03G0120900 Oryza sativa OS03G0120900 N 0.861
OS10G0537100 Oryza sativa OS10G0537100 N 0.782
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.713
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.901
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.703
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.723
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.832
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.755
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.861
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.802
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.851
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.743
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.703
Si011823m.g Setaria italica Si011823m.g N 0.861
Si020241m.g Setaria italica Si020241m.g N 0.772
Si027632m.g Setaria italica Si027632m.g N 0.713
Si036864m.g Setaria italica Si036864m.g N 0.851
Si039972m.g Setaria italica Si039972m.g N 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.713
TCM_022729 Theobroma cacao TCM_022729 N 0.733
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.752
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.842
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.707
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.822
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.851
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.812
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.713
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.752
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.782
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.743
Ca_00826 Cicer arietinum Ca_00826 N 0.713
Cla005055 Citrullus lanatus Cla005055 N 0.812
Cla014858 Citrullus lanatus Cla014858 N 0.879
Pm028725 Prunus mume Pm028725 N 0.842
30032.m000462 Ricinus communis 30032.m000462 N 0.733
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.733
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.703
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.871
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.802
mgf019085m Mimulus guttatus mgf019085m N 0.733
mgf023769m Mimulus guttatus mgf023769m N 0.891
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.752
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.832
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.743
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.703
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.881
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.842
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.871
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.703
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.733
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.842
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.842
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.733
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.871
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.703
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.890
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.733
MDP0000138163 Malus domestica MDP0000138163 N 0.802
MDP0000288808 Malus domestica MDP0000288808 N 0.812
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.802
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.703
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.703
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.851
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.842
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.842
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.743
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.821
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.743
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.851
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.723
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.703
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.723
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.891
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.842
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.703
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.733
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.713