PATZ1 (Microcebus murinus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMICG00000005430 T098400_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.827 1.000
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.827 1.000
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000004956 C2H2 ZF 225 247
ENSMICP00000004956 C2H2 ZF 289 310
ENSMICP00000004956 C2H2 ZF 316 338
ENSMICP00000004956 C2H2 ZF 346 369
ENSMICP00000004956 C2H2 ZF 375 397
ENSMICP00000004956 C2H2 ZF 429 451

Links

Other C2H2 ZF family TFs
Other Microcebus murinus TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G58630 Arabidopsis thaliana AT3G58630 D
Cla009854 Citrullus lanatus Cla009854 I
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I
mgf006505m Mimulus guttatus mgf006505m I
Cucsa.213120 Cucumis sativus Cucsa.213120 I
Cucsa.213110 Cucumis sativus Cucsa.213110 I
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I
cassava21220.m1 Manihot esculenta cassava21220.m1 I
29900.m001628 Ricinus communis 29900.m001628 I
Cla019967 Citrullus lanatus Cla019967 I
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I
Cla002288 Citrullus lanatus Cla002288 I
Ca_19877 Cicer arietinum Ca_19877 I
Ca_00394 Cicer arietinum Ca_00394 I
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I
TCM_029695 Theobroma cacao TCM_029695 I
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I
MDP0000301451 Malus domestica MDP0000301451 I
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I
PK27986.1 Cannabis sativa PK27986.1 I
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I
Pavir.J33948 Panicum virgatum Pavir.J33948 I
Pavir.J11649 Panicum virgatum Pavir.J11649 I
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I
Lus10025404.g Linum usitatissimum Lus10025404.g I
Lus10015282.g Linum usitatissimum Lus10015282.g I
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I
Carubv10017646m.g Capsella rubella Carubv10017646m.g I
GLYMA13G30280 Glycine max GLYMA13G30280 I
Si022565m.g Setaria italica Si022565m.g I
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I
GRMZM2G157219 Zea mays GRMZM2G157219 I
GLYMA15G08890 Glycine max GLYMA15G08890 I
GLYMA13G36650 Glycine max GLYMA13G36650 I
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I
GLYMA12G33850 Glycine max GLYMA12G33850 I
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I
Bra007407 Brassica rapa Bra007407 I
Bra003346 Brassica rapa Bra003346 I
Bo6g075950 Brassica oleracea Bo6g075950 I
BGIOSGA020351 Oryza indica BGIOSGA020351 I
BGIOSGA020349 Oryza indica BGIOSGA020349 I
MTR_4g079960 Medicago truncatula MTR_4g079960 I
Sb09g028350 Sorghum bicolor Sb09g028350 I
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I
OS05G0560600 Oryza sativa OS05G0560600 I
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I
OPUNC05G23220 Oryza punctata OPUNC05G23220 I
ONIVA05G26860 Oryza nivara ONIVA05G26860 I
OMERI02G35600 Oryza meridionalis OMERI02G35600 I
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I
OBART05G25610 Oryza barthii OBART05G25610 I
MTR_2g016140 Medicago truncatula MTR_2g016140 I
Lus10025406.g Linum usitatissimum Lus10025406.g N
Lus10007273.g Linum usitatissimum Lus10007273.g N
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N
TCM_042467 Theobroma cacao TCM_042467 N