Cmyd_10010560 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10010560 T134349_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.825 0.986
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.825 0.986
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.825 0.986
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.825 0.986
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.825 0.986
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.825 0.986
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.825 0.986
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.825 0.986
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.825 0.986
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.825 0.986
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.825 0.986
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.825 0.986
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.825 0.986
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.825 0.986
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.825 0.986
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.819 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010560 C2H2 ZF 516 539
Cmyd_10010560 C2H2 ZF 544 566
Cmyd_10010560 C2H2 ZF 572 594
Cmyd_10010560 C2H2 ZF 600 622
Cmyd_10010560 C2H2 ZF 628 650
Cmyd_10010560 C2H2 ZF 656 679

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.000
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.000
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.000
PK12011.1 Cannabis sativa PK12011.1 D 0.000
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.000
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.000
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.000
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.000
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.000
Bo1g010040 Brassica oleracea Bo1g010040 I 0.000
Bo3g007070 Brassica oleracea Bo3g007070 I 0.000
Bo3g171130 Brassica oleracea Bo3g171130 I 0.000
Bo3g179620 Brassica oleracea Bo3g179620 I 0.000
Bo7g115810 Brassica oleracea Bo7g115810 I 0.000
Bo9g171130 Brassica oleracea Bo9g171130 I 0.000
Bra006102 Brassica rapa Bra006102 I 0.000
Bra008956 Brassica rapa Bra008956 I 0.000
Bra011376 Brassica rapa Bra011376 I 0.000
Bra034531 Brassica rapa Bra034531 I 0.000
Bra037045 Brassica rapa Bra037045 I 0.000
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.000
F775_05724 Aegilops tauschii F775_05724 I 0.000
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.000
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.000
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.000
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.000
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.000
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.000
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.000
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.000
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.000
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.000
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.000
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.000
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.000
OB01G18340 Oryza brachyantha OB01G18340 I 0.000
OB01G45570 Oryza brachyantha OB01G45570 I 0.000
OB12G16480 Oryza brachyantha OB12G16480 I 0.000
OBART01G08110 Oryza barthii OBART01G08110 I 0.000
OBART05G19200 Oryza barthii OBART05G19200 I 0.000
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.000
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.000
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.000
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.000
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.000
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.000
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.000
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.000
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.000
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.000
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.000
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.000
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.000
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.000
MYB3R-2 Oryza sativa OS01G0841500 I 0.000
OS05G0459000 Oryza sativa OS05G0459000 I 0.000
OS12G0238000 Oryza sativa OS12G0238000 I 0.000
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.000
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.000
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.000
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.000
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.000
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.000
Si000842m.g Setaria italica Si000842m.g I 0.000
Si021484m.g Setaria italica Si021484m.g I 0.000
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.000
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.000
TCM_047091 Theobroma cacao TCM_047091 I 0.000
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.000
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.000
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.000
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.000
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.000
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.000
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.000
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.000
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.000
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.000
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.000
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.000
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.000
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.000
Ca_01884 Cicer arietinum Ca_01884 I 0.000
Ca_14925 Cicer arietinum Ca_14925 I 0.000
Cla022565 Citrullus lanatus Cla022565 I 0.000
Cla023357 Citrullus lanatus Cla023357 I 0.000
Pm005124 Prunus mume Pm005124 I 0.000
Pm018007 Prunus mume Pm018007 I 0.000
29794.m003447 Ricinus communis 29794.m003447 I 0.000
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.000
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.000
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.000
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.000
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.000
mgf006384m Mimulus guttatus mgf006384m I 0.000
mgf008601m Mimulus guttatus mgf008601m I 0.000
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.000
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.000
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.000
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.000
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.000
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.000
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.000
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.000
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.000
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.000
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.000
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.000
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.000
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.000
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.000
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.000
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.000
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.000
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.000
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.000
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.000
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.000
MDP0000179225 Malus domestica MDP0000179225 I 0.000
MDP0000295807 Malus domestica MDP0000295807 I 0.000
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.000
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.000
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.000
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.000
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.000
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.000
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.000
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.000
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.000
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.000
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.000
PK22174.1 Cannabis sativa PK22174.1 I 0.000
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.000
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.000
BRADI2G07677 Brachypodium distachyon BRADI2G07677 N 0.000
OB05G26770 Oryza brachyantha OB05G26770 N 0.000
OPUNC12G06560 Oryza punctata OPUNC12G06560 N 0.000
ORUFI01G08920 Oryza rufipogon ORUFI01G08920 N 0.000
Sb09g007370 Sorghum bicolor Sb09g007370 N 0.000
Gorai.008G117400 Gossypium raimondii Gorai.008G117400 N 0.000