LIN28B (Sorex araneus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSARG00000008374 T164778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000007561 CSD 30 102

Links

Other CSD family TFs
Other Sorex araneus TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G58630 Arabidopsis thaliana AT3G58630 D
Cla002288 Citrullus lanatus Cla002288 I
mgf006505m Mimulus guttatus mgf006505m I
mgf000047m Mimulus guttatus mgf000047m I
Cucsa.213120 Cucumis sativus Cucsa.213120 I
Cucsa.213110 Cucumis sativus Cucsa.213110 I
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I
cassava21220.m1 Manihot esculenta cassava21220.m1 I
29900.m001628 Ricinus communis 29900.m001628 I
Cla019967 Citrullus lanatus Cla019967 I
Cla009854 Citrullus lanatus Cla009854 I
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I
Ca_19877 Cicer arietinum Ca_19877 I
Ca_00394 Cicer arietinum Ca_00394 I
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I
TCM_029695 Theobroma cacao TCM_029695 I
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I
Lus10015282.g Linum usitatissimum Lus10015282.g I
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I
PK27986.1 Cannabis sativa PK27986.1 I
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I
Pavir.J33948 Panicum virgatum Pavir.J33948 I
Pavir.J11649 Panicum virgatum Pavir.J11649 I
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I
Lus10025404.g Linum usitatissimum Lus10025404.g I
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I
Carubv10017646m.g Capsella rubella Carubv10017646m.g I
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I
GLYMA13G30280 Glycine max GLYMA13G30280 I
MTR_2g016140 Medicago truncatula MTR_2g016140 I
Si022565m.g Setaria italica Si022565m.g I
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I
GRMZM2G157219 Zea mays GRMZM2G157219 I
GLYMA15G08890 Glycine max GLYMA15G08890 I
GLYMA13G36650 Glycine max GLYMA13G36650 I
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I
GLYMA12G33850 Glycine max GLYMA12G33850 I
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I
Bra007407 Brassica rapa Bra007407 I
Bra003346 Brassica rapa Bra003346 I
Bo6g075950 Brassica oleracea Bo6g075950 I
BGIOSGA020351 Oryza indica BGIOSGA020351 I
BGIOSGA020349 Oryza indica BGIOSGA020349 I
OS05G0560600 Oryza sativa OS05G0560600 I
Sb09g028350 Sorghum bicolor Sb09g028350 I
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I
MTR_4g079960 Medicago truncatula MTR_4g079960 I
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I
OPUNC05G23220 Oryza punctata OPUNC05G23220 I
ONIVA05G26860 Oryza nivara ONIVA05G26860 I
OMERI02G35600 Oryza meridionalis OMERI02G35600 I
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I
OBART05G25610 Oryza barthii OBART05G25610 I
Lus10007273.g Linum usitatissimum Lus10007273.g N
GRMZM2G023119 Zea mays GRMZM2G023119 N
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
Lus10025406.g Linum usitatissimum Lus10025406.g N
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N
TCM_042467 Theobroma cacao TCM_042467 N