orange1.1g022728m.g (Citrus sinensis)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 orange1.1g022728m.g T196710_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.851 0.944
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.851 0.889
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.851 0.889
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.851 0.861
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.815 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g022728m GATA 215 252
orange1.1g023560m GATA 202 239
orange1.1g025411m GATA 215 251
orange1.1g027756m GATA 141 178

Links

Other GATA family TFs
Other Citrus sinensis TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-232 Caenorhabditis elegans WBGene00012494 D
L889_g6695 Steinernema feltiae L889_g6695 I
L892_g14817 Steinernema scapterisci L892_g14817 I
L892_g10843 Steinernema scapterisci L892_g10843 I
L892_g10842 Steinernema scapterisci L892_g10842 I
L889_g8187 Steinernema feltiae L889_g8187 I
L889_g8185 Steinernema feltiae L889_g8185 I
L889_g6804 Steinernema feltiae L889_g6804 I
L889_g6792 Steinernema feltiae L889_g6792 I
L889_g6696 Steinernema feltiae L889_g6696 I
L892_g14818 Steinernema scapterisci L892_g14818 I
L889_g6694 Steinernema feltiae L889_g6694 I
L889_g6692 Steinernema feltiae L889_g6692 I
L596_g14596 Steinernema carpocapsae L596_g14596 I
L596_g14590 Steinernema carpocapsae L596_g14590 I
L596_g14589 Steinernema carpocapsae L596_g14589 I
L596_g14588 Steinernema carpocapsae L596_g14588 I
L596_g14586 Steinernema carpocapsae L596_g14586 I
L596_g14537 Steinernema carpocapsae L596_g14537 I
L898_g19014 Steinernema monticolum L898_g19014 I
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I
L898_g3515 Steinernema monticolum L898_g3515 I
L898_g3512 Steinernema monticolum L898_g3512 I
L898_g21763 Steinernema monticolum L898_g21763 I
CBG06611 Caenorhabditis briggsae CBG06611 I
L898_g12799 Steinernema monticolum L898_g12799 I
L898_g12798 Steinernema monticolum L898_g12798 I
L893_g27930 Steinernema glaseri L893_g27930 I
L893_g18993 Steinernema glaseri L893_g18993 I
L893_g18992 Steinernema glaseri L893_g18992 I
L892_g2782 Steinernema scapterisci L892_g2782 I
L892_g2781 Steinernema scapterisci L892_g2781 I
L892_g2780 Steinernema scapterisci L892_g2780 I
CJA02156 Caenorhabditis japonica CJA02156 I
CRE31070 Caenorhabditis remanei CRE31070 I
L596_g14536 Steinernema carpocapsae L596_g14536 I
CRE18430 Caenorhabditis remanei CRE18430 I
CRE15675 Caenorhabditis remanei CRE15675 I
CRE15644 Caenorhabditis remanei CRE15644 I
CRE08691 Caenorhabditis remanei CRE08691 I
CRE00301 Caenorhabditis remanei CRE00301 I
CJA28065 Caenorhabditis japonica CJA28065 I
CJA09697 Caenorhabditis japonica CJA09697 I
CRE30948 Caenorhabditis remanei CRE30948 I
CBN23838 Caenorhabditis brenneri CBN23838 I
CBN12210 Caenorhabditis brenneri CBN12210 I
CBG22870 Caenorhabditis briggsae CBG22870 I
CBG20729 Caenorhabditis briggsae CBG20729 I
CBG20727 Caenorhabditis briggsae CBG20727 I
CBG14515 Caenorhabditis briggsae CBG14515 I
CBG09567 Caenorhabditis briggsae CBG09567 I
CBG09320 Caenorhabditis briggsae CBG09320 I
CBG06601 Caenorhabditis briggsae CBG06601 I
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I
L596_g14533 Steinernema carpocapsae L596_g14533 I
L596_g14532 Steinernema carpocapsae L596_g14532 I
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
HCOI01190000 Haemonchus contortus HCOI01190000 I
HCOI00483700 Haemonchus contortus HCOI00483700 I
nhr-45 Caenorhabditis elegans WBGene00003635 I
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
nhr-178 Caenorhabditis elegans WBGene00017510 I
nhr-231 Caenorhabditis elegans WBGene00012449 I
nhr-213 Caenorhabditis elegans WBGene00011520 I
nhr-170 Caenorhabditis elegans WBGene00008309 I
nhr-54 Caenorhabditis elegans WBGene00003644 I
L893_g27935 Steinernema glaseri L893_g27935 N
L889_g6803 Steinernema feltiae L889_g6803 N
L898_g32142 Steinernema monticolum L898_g32142 N
L889_g6806 Steinernema feltiae L889_g6806 N
L892_g14834 Steinernema scapterisci L892_g14834 N
L596_g14580 Steinernema carpocapsae L596_g14580 N