Cla008712 (Citrullus lanatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cla008712 T225581_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.682 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla008712 Homeodomain 56 112

Links

Other Homeodomain family TFs
Other Citrullus lanatus TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK25011.1 Cannabis sativa PK25011.1 D 0.682
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.632
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.657
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.671
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.635
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.671
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.657
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.771
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.771
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.657
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.657
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.609
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.659
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.610
mgf007720m Mimulus guttatus mgf007720m I 0.620
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.853
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.671
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.621
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.680
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.671
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.710
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.698
PK06068.1 Cannabis sativa PK06068.1 I 0.659
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.769
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.657
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.671
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.671
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.671
29983.m003128 Ricinus communis 29983.m003128 I 0.671
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.612
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.671
MDP0000207866 Malus domestica MDP0000207866 I 0.863
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.671
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.671
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.673
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.671
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.853
Ca_21400 Cicer arietinum Ca_21400 I 0.783
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.819
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.646
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.687
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.853
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.687
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.657
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.853
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.625
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.657
Bra034196 Brassica rapa Bra034196 I 0.766
Bra033725 Brassica rapa Bra033725 I 0.669
Bo9g006450 Brassica oleracea Bo9g006450 I 0.766
Bo7g067190 Brassica oleracea Bo7g067190 I 0.669
RLT2 Arabidopsis thaliana AT5G44180 I 0.641
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.771
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.702
Ca_11272 Cicer arietinum Ca_11272 I 0.659
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.659
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.642
TCM_040945 Theobroma cacao TCM_040945 I 0.621
TCM_008214 Theobroma cacao TCM_008214 I 0.671
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.657
Solyc11g065110.1 Solanum lycopersicum Solyc11g065110.1 I 0.604
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.659
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.702
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.601
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.682
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.682
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.860
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.671
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.614
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.671
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.612
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.782