LDEC000649 (Leptinotarsa decemlineata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 LDEC000649 T229977_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.802 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.802 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.802 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.802 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.802 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.802 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.802 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.802 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.802 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC000649-PA Homeodomain 54 99

Links

Other Homeodomain family TFs
Other Leptinotarsa decemlineata TFs

1247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g145670 Brassica oleracea Bo4g145670 I 0.000
Bra030325 Brassica rapa Bra030325 I 0.000
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.000
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
Pm020837 Prunus mume Pm020837 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.000
gene26519-v1.0-hybrid Fragaria vesca gene26519-v1.0-hybrid N 0.000
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.000
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.000
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.000
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.000
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.000
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.000
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.000
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N 0.000
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.000
PK03316.1 Cannabis sativa PK03316.1 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.000
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.000
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.000
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.000
MDP0000632148 Malus domestica MDP0000632148 N 0.000
MDP0000225222 Malus domestica MDP0000225222 N 0.000
MDP0000202739 Malus domestica MDP0000202739 N 0.000
MDP0000198079 Malus domestica MDP0000198079 N 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
MDP0000121628 Malus domestica MDP0000121628 N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
OBART02G01600 Oryza barthii OBART02G01600 N 0.000
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.000
OS02G0121100 Oryza sativa OS02G0121100 N 0.000
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.000
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.000
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.000
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.000
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.000
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.000
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.000
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.000
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.000
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.000
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.000
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.000
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.000
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.000
NCLIV_038710 Neospora caninum NCLIV_038710 N 0.000
gw1.103.78.1 Physcomitrella patens gw1.103.78.1 N 0.000
estExt_gwp_gw1.C_640002 Physcomitrella patens estExt_gwp_gw1.C_640002 N 0.000
estExt_gwp_gw1.C_410063 Physcomitrella patens estExt_gwp_gw1.C_410063 N 0.000
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
Cla016088 Citrullus lanatus Cla016088 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.000
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.000
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.000
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.000
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.000
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.000
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000