GLYMA13G30280 (Glycine max)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 GLYMA13G30280 T249119_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.904 0.667
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.904 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G30280.1 MADF 37 117

Links

Other MADF family TFs
Other Glycine max TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.904
Cla009854 Citrullus lanatus Cla009854 I 0.955
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.876
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.904
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.881
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.881
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.910
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.903
29900.m001628 Ricinus communis 29900.m001628 I 0.910
29814.m000741 Ricinus communis 29814.m000741 I 0.817
Cla019967 Citrullus lanatus Cla019967 I 0.881
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.876
Cla002288 Citrullus lanatus Cla002288 I 0.841
Ca_19877 Cicer arietinum Ca_19877 I 0.898
Ca_00394 Cicer arietinum Ca_00394 I 0.971
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.950
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.917
TCM_029695 Theobroma cacao TCM_029695 I 0.971
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.888
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.956
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.902
PK27986.1 Cannabis sativa PK27986.1 I 0.963
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.904
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.816
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.960
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.936
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.814
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.814
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.935
MDP0000301451 Malus domestica MDP0000301451 I 0.955
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.864
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.864
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.971
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.950
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.962
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.896
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.956
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.971
Si022565m.g Setaria italica Si022565m.g I 0.814
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.959
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.876
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.815
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.909
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.856
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.854
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.863
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.814
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.895
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.895
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.852
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.903
Bra007407 Brassica rapa Bra007407 I 0.861
Bra003346 Brassica rapa Bra003346 I 0.903
Bo6g075950 Brassica oleracea Bo6g075950 I 0.903
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.831
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.831
OS05G0560600 Oryza sativa OS05G0560600 I 0.831
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.814
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.914
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.951
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.816
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.955
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.969
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.863
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.939
OBART05G25610 Oryza barthii OBART05G25610 I 0.831
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.831
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.831
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.814
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.831
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.831
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.831
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.864
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.835
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.855
mgf001239m Mimulus guttatus mgf001239m N 0.841