gene32198-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene32198-v1.0-hybrid T287422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.738 0.871
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.738 0.871
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.683 0.753
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.683 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna32198.1-v1.0-hybrid Myb 221 267
mrna32198.1-v1.0-hybrid Myb 273 318

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT10 Arabidopsis thaliana AT1G27730 D
ZAT4 Arabidopsis thaliana AT2G45120 D
AZF2 Arabidopsis thaliana AT3G19580 D
ZAT9 Arabidopsis thaliana AT3G60580 D
ZAT6 Arabidopsis thaliana AT5G04340 D
AZF1 Arabidopsis thaliana AT5G67450 D
AC185108.3_FG011 Zea mays AC185108.3_FG011 I
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I
AZF3 Arabidopsis thaliana AT5G43170 I
Bo1g081350 Brassica oleracea Bo1g081350 I
Bo1g113530 Brassica oleracea Bo1g113530 I
Bo2g168030 Brassica oleracea Bo2g168030 I
Bo3g037560 Brassica oleracea Bo3g037560 I
Bo3g142840 Brassica oleracea Bo3g142840 I
Bo4g195370 Brassica oleracea Bo4g195370 I
Bo5g052290 Brassica oleracea Bo5g052290 I
Bo5g113850 Brassica oleracea Bo5g113850 I
Bo7g048650 Brassica oleracea Bo7g048650 I
Bo7g065200 Brassica oleracea Bo7g065200 I
Bo9g019120 Brassica oleracea Bo9g019120 I
Bo9g181170 Brassica oleracea Bo9g181170 I
Bra000372 Brassica rapa Bra000372 I
Bra009464 Brassica rapa Bra009464 I
Bra010922 Brassica rapa Bra010922 I
Bra012914 Brassica rapa Bra012914 I
Bra018817 Brassica rapa Bra018817 I
Bra022436 Brassica rapa Bra022436 I
Bra029985 Brassica rapa Bra029985 I
Bra031834 Brassica rapa Bra031834 I
Bra032845 Brassica rapa Bra032845 I
Bra033666 Brassica rapa Bra033666 I
Bra037845 Brassica rapa Bra037845 I
Bra038219 Brassica rapa Bra038219 I
Bra040325 Brassica rapa Bra040325 I
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I
GLYMA01G18606 Glycine max GLYMA01G18606 I
GLYMA01G32981 Glycine max GLYMA01G32981 I
GLYMA03G03950 Glycine max GLYMA03G03950 I
GLYMA04G04760 Glycine max GLYMA04G04760 I
GLYMA06G04840 Glycine max GLYMA06G04840 I
GLYMA10G40400 Glycine max GLYMA10G40400 I
GLYMA14G09760 Glycine max GLYMA14G09760 I
GLYMA17G35430 Glycine max GLYMA17G35430 I
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I
LPERR03G21480 Leersia perrieri LPERR03G21480 I
MLOC_51405 Hordeum vulgare MLOC_51405 I
MLOC_54674 Hordeum vulgare MLOC_54674 I
MLOC_70662 Hordeum vulgare MLOC_70662 I
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I
MTR_1g018420 Medicago truncatula MTR_1g018420 I
MTR_1g106730 Medicago truncatula MTR_1g106730 I
MTR_3g102980 Medicago truncatula MTR_3g102980 I
MTR_4g027440 Medicago truncatula MTR_4g027440 I
OB03G42170 Oryza brachyantha OB03G42170 I
OPUNC12G15600 Oryza punctata OPUNC12G15600 I
OS12G0583700 Oryza sativa OS12G0583700 I
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I
Sb02g038070 Sorghum bicolor Sb02g038070 I
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I
C2H2 Arabidopsis lyrata scaffold_600374.1 I
Si023013m.g Setaria italica Si023013m.g I
Si032711m.g Setaria italica Si032711m.g I
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I
TCM_000780 Theobroma cacao TCM_000780 I
TCM_007214 Theobroma cacao TCM_007214 I
TCM_034720 Theobroma cacao TCM_034720 I
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I
Ca_01586 Cicer arietinum Ca_01586 I
Ca_05641 Cicer arietinum Ca_05641 I
Ca_18364 Cicer arietinum Ca_18364 I
Ca_23672 Cicer arietinum Ca_23672 I
Cla001400 Citrullus lanatus Cla001400 I
Cla022966 Citrullus lanatus Cla022966 I
Pm005390 Prunus mume Pm005390 I
Pm021284 Prunus mume Pm021284 I
28152.m000908 Ricinus communis 28152.m000908 I
30147.m014242 Ricinus communis 30147.m014242 I
30170.m013751 Ricinus communis 30170.m013751 I
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I
cassava21316.m1 Manihot esculenta cassava21316.m1 I
cassava32957.m1 Manihot esculenta cassava32957.m1 I
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I
Cucsa.219210 Cucumis sativus Cucsa.219210 I
Cucsa.352740 Cucumis sativus Cucsa.352740 I
Cucsa.395710 Cucumis sativus Cucsa.395710 I
mgf006006m Mimulus guttatus mgf006006m I
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I
Carubv10001868m.g Capsella rubella Carubv10001868m.g I
Carubv10014391m.g Capsella rubella Carubv10014391m.g I
Carubv10017660m.g Capsella rubella Carubv10017660m.g I
Carubv10023569m.g Capsella rubella Carubv10023569m.g I
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I
Lus10009278.g Linum usitatissimum Lus10009278.g I
Lus10015888.g Linum usitatissimum Lus10015888.g I
MDP0000198015 Malus domestica MDP0000198015 I
MDP0000319225 Malus domestica MDP0000319225 I
MDP0000573176 Malus domestica MDP0000573176 I
MDP0000762756 Malus domestica MDP0000762756 I
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I
Pavir.J15191 Panicum virgatum Pavir.J15191 I
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I
PK10188.1 Cannabis sativa PK10188.1 I
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I