gene01591-v1.0-hybrid (Fragaria vesca)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 gene01591-v1.0-hybrid T343161_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.868 0.868
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.868 0.868
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.868 0.868
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.862 0.862
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.862 0.862
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.862 0.862
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.862 0.862
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.862 0.862
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.862 0.862
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.862 0.862
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.862 0.862
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.862 0.862
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.862 0.862
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01591.1-v1.0-hybrid TBP 29 113
mrna01591.1-v1.0-hybrid TBP 121 204

Links

Other TBP family TFs
Other Fragaria vesca TFs

786 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD19 Arabidopsis thaliana AT2G45410 D
LBD18 Arabidopsis thaliana AT2G45420 D
LBD30 Arabidopsis thaliana AT4G00220 D
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I
LBD31 Arabidopsis thaliana AT4G00210 I
BGIOSGA011118 Oryza indica BGIOSGA011118 I
BGIOSGA032254 Oryza indica BGIOSGA032254 I
Bo2g097560 Brassica oleracea Bo2g097560 I
Bo4g024610 Brassica oleracea Bo4g024610 I
Bo4g024620 Brassica oleracea Bo4g024620 I
Bo4g195510 Brassica oleracea Bo4g195510 I
Bo4g195520 Brassica oleracea Bo4g195520 I
Bo9g002150 Brassica oleracea Bo9g002150 I
Bo9g002160 Brassica oleracea Bo9g002160 I
Bra004908 Brassica rapa Bra004908 I
Bra004910 Brassica rapa Bra004910 I
Bra008514 Brassica rapa Bra008514 I
Bra037322 Brassica rapa Bra037322 I
Bra037323 Brassica rapa Bra037323 I
Bra040311 Brassica rapa Bra040311 I
Bra040312 Brassica rapa Bra040312 I
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I
F775_04528 Aegilops tauschii F775_04528 I
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I
GLYMA01G34523 Glycine max GLYMA01G34523 I
GLYMA01G34540 Glycine max GLYMA01G34540 I
GLYMA03G02620 Glycine max GLYMA03G02620 I
GLYMA03G02631 Glycine max GLYMA03G02631 I
GLYMA09G40500 Glycine max GLYMA09G40500 I
GLYMA10G04040 Glycine max GLYMA10G04040 I
GLYMA13G18191 Glycine max GLYMA13G18191 I
GLYMA18G45320 Glycine max GLYMA18G45320 I
GLYMA19G34590 Glycine max GLYMA19G34590 I
GRMZM2G076327 Zea mays GRMZM2G076327 I
GRMZM2G110913 Zea mays GRMZM2G110913 I
GRMZM2G150594 Zea mays GRMZM2G150594 I
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I
LPERR03G09330 Leersia perrieri LPERR03G09330 I
MLOC_55239 Hordeum vulgare MLOC_55239 I
MTR_7g074990 Medicago truncatula MTR_7g074990 I
MTR_7g075230 Medicago truncatula MTR_7g075230 I
MTR_8g036085 Medicago truncatula MTR_8g036085 I
MTR_8g036105 Medicago truncatula MTR_8g036105 I
OB03G20590 Oryza brachyantha OB03G20590 I
OB10G12360 Oryza brachyantha OB10G12360 I
OBART03G10450 Oryza barthii OBART03G10450 I
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I
OLONG_001985 Oryza longistaminata OLONG_001985 I
OLONG_028429 Oryza longistaminata OLONG_028429 I
OMERI03G09680 Oryza meridionalis OMERI03G09680 I
ONIVA10G03250 Oryza nivara ONIVA10G03250 I
OPUNC03G10080 Oryza punctata OPUNC03G10080 I
OPUNC10G02630 Oryza punctata OPUNC10G02630 I
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I
OS03G0246900 Oryza sativa OS03G0246900 I
OS10G0162600 Oryza sativa OS10G0162600 I
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I
Sb01g024400 Sorghum bicolor Sb01g024400 I
Sb01g041130 Sorghum bicolor Sb01g041130 I
Sb07g023810 Sorghum bicolor Sb07g023810 I
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I
TCM_004106 Theobroma cacao TCM_004106 I
TCM_005496 Theobroma cacao TCM_005496 I
TCM_005497 Theobroma cacao TCM_005497 I
TCM_025849 Theobroma cacao TCM_025849 I
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I
TRIUR3_25587 Triticum urartu TRIUR3_25587 I
LBD20 Vitis vinifera VIT_08s0056g01650 I
LBD30 Vitis vinifera VIT_15s0048g00830 I
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I
Ca_19598 Cicer arietinum Ca_19598 I
Ca_20428 Cicer arietinum Ca_20428 I
Cla002965 Citrullus lanatus Cla002965 I
Cla007068 Citrullus lanatus Cla007068 I
Cla007069 Citrullus lanatus Cla007069 I
Cla021625 Citrullus lanatus Cla021625 I
Pm017935 Prunus mume Pm017935 I
Pm017936 Prunus mume Pm017936 I
Pm028642 Prunus mume Pm028642 I
30174.m008897 Ricinus communis 30174.m008897 I
30174.m008898 Ricinus communis 30174.m008898 I
cassava28659.m1 Manihot esculenta cassava28659.m1 I
cassava28672.m1 Manihot esculenta cassava28672.m1 I
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I
cassava40137.m1 Manihot esculenta cassava40137.m1 I
Cucsa.257700 Cucumis sativus Cucsa.257700 I
Cucsa.362830 Cucumis sativus Cucsa.362830 I
Cucsa.362840 Cucumis sativus Cucsa.362840 I
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I
Carubv10001875m.g Capsella rubella Carubv10001875m.g I
Carubv10002489m.g Capsella rubella Carubv10002489m.g I
Carubv10025050m.g Capsella rubella Carubv10025050m.g I
Carubv10025477m.g Capsella rubella Carubv10025477m.g I
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I
Lus10009298.g Linum usitatissimum Lus10009298.g I
MDP0000131964 Malus domestica MDP0000131964 I
MDP0000254224 Malus domestica MDP0000254224 I
MDP0000429067 Malus domestica MDP0000429067 I
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I
Pavir.J34872 Panicum virgatum Pavir.J34872 I
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I
PK23185.1 Cannabis sativa PK23185.1 I
PK25573.1 Cannabis sativa PK25573.1 I
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N