OBART02G37860 (Oryza barthii)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 OBART02G37860 T017649_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BRADI3G55950
M01673_2.00 		Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH9369 		0.991 1.000
OS02G0824300
M01688_2.00 		Oryza sativa
NNDWAWWN
NWWTWHNN		 PBM
Weirauch et al.(2014)
pTH8406 		0.991 1.000
AHL13
M01672_2.00 		Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN		 PBM
Weirauch et al.(2014)
pTH8202 		0.991 0.846
VIT_08s0007g04020
M01689_2.00 		Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH		 PBM
Weirauch et al.(2014)
pTH9295 		0.991 0.808
TVAG_474020
M01106_2.00 		Trichomonas vaginalis
DNWWWAWW
WWTWWWNH		 PBM
Lambert et al.(2019)
pTH11493 		0.991 0.538
FGRRES_17512
M01105_2.00 		Fusarium graminearum
NNNDNWWWW
WWWWNHNNN		 PBM
Lambert et al.(2019)
pTH11412 		0.991 0.500
SUM1
M00008_2.00 		Saccharomyces cerevisiae
NNDWWWH
DWWWHNN		 PBM
Badis et al.(2008)
SUM1_2124 		0.991 0.462
SUM1
M07439_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1 		0.991 0.462
SUM1
M08478_2.00 		Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY		 Misc
DeBoer et al.(2011)
YDR310C_383 		0.991 0.462
SUM1
M08479_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 Misc
DeBoer et al.(2011)
YDR310C_478 		0.991 0.462
MTR_4g101990
M01687_2.00 		Medicago truncatula
AAAWTAAT
ATTAWTTT		 PBM
Weirauch et al.(2014)
pTH9209 		0.991 0.423
PK00377.1
M01107_2.00 		Cannabis sativa
DAWWWAWW
WWTWWWTH		 PBM
Lambert et al.(2019)
pTH11338 		0.991 0.423
Q7DLU9_PEA
M09772_2.00 		Pisum sativum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HMGIY_01 		0.991 0.423
HMGA1
M09769_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_01 		0.991 0.410
HMGA1
M09770_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_Q4 		0.991 0.410
ANIA_01690
M01675_2.00 		Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH8216 		0.991 0.405
ENSPPYG00000004736
M01685_2.00 		Pongo abelii
NNNNDWWW
WWWHNNNN		 PBM
Weirauch et al.(2014)
pTH9279 		0.991 0.395
Hmga2
M00751_2.00 		Mus musculus
NNNNRHWWNN
NNWWDYNNNN		 PBM
Weirauch et al.(2013)
pTH3046 		0.991 0.385
HMGA2
M09771_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGA2_01 		0.991 0.385
BRADI5G22430
M01674_2.00 		Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB		 PBM
Weirauch et al.(2014)
pTH9242 		0.991 0.346
FGRRES_05233
M01104_2.00 		Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN		 PBM
Lambert et al.(2019)
pTH11377 		0.991 0.333
Setbp1
M01683_2.00 		Mus musculus
NDNNNNNNHN
NDNNNNNNHN		 PBM
Weirauch et al.(2014)
pTH1294 		0.991 0.308
Ahctf1
M00750_2.00 		Mus musculus
AAAWAWAW
ATWTWTTT		 PBM
Weirauch et al.(2013)
pTH2361 		0.991 0.308
Xrp1
M01686_2.00 		Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH9260 		0.991 0.308
PK26376.1
M01108_2.00 		Cannabis sativa
DDWWWAWW
WWTWWWHH		 PBM
Lambert et al.(2019)
pTH11261 		0.991 0.308
Xrp1
M05900_2.00 		Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY		 B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113 		0.991 0.308
NCU05635
M01694_2.00 		Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN		 PBM
Weirauch et al.(2014)
pTH8863 		0.991 0.289
ATEG_07399
M01676_2.00 		Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH		 PBM
Weirauch et al.(2014)
pTH9237 		0.991 0.269
ENSACAG00000014978
M01677_2.00 		Anolis carolinensis
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9222 		0.991 0.269
phf21ab
M01678_2.00 		Danio rerio
NNNDNADW
WHTNHNNN		 PBM
Weirauch et al.(2014)
pTH9254 		0.991 0.269
kmt2cb
M01679_2.00 		Danio rerio
WWAWAWAT
ATWTWTWW		 PBM
Weirauch et al.(2014)
pTH7876 		0.991 0.269
phf21ab
M01680_2.00 		Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT		 PBM
Weirauch et al.(2014)
pTH9180 		0.991 0.269
PHF21A
M01681_2.00 		Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD		 PBM
Weirauch et al.(2014)
pTH7875 		0.991 0.269
PHF21A
M01103_2.00 		Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN		 PBM
Lambert et al.(2019)
pTH9309 		0.991 0.269
PHF21A
M01682_2.00 		Monodelphis domestica
NNNNNHRH
DYDNNNNN		 PBM
Weirauch et al.(2014)
pTH9335 		0.991 0.269
Phf21a
M01684_2.00 		Mus musculus
NNNATATWAATN
NATTWATATNNN		 PBM
Weirauch et al.(2014)
pTH8550 		0.991 0.269
HMGA
M01671_2.00 		Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH7395 		0.991 0.250
HMG-I Y
M02652_2.00 		Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN		 SELEX
Mathelier et al.(2014)
MA0045.1 		0.991 0.250
estExt_fgeneshNG_pg.C_820014
M01692_2.00 		Naegleria gruberi
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9380 		0.991 0.231
NCU01145
M01693_2.00 		Neurospora crassa
RWATAWWTNN
NNAWWTATWY		 PBM
Weirauch et al.(2014)
pTH8916 		0.991 0.226
athp-3
M01691_2.00 		Caenorhabditis elegans
NNDDWDH
DHWHHNN		 PBM
Weirauch et al.(2014)
pTH9097 		0.991 0.210
hmg-12
M01690_2.00 		Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN		 PBM
Weirauch et al.(2014)
pTH8997 		0.991 0.148
SUM1
M01517_2.00 		Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN		 PBM
Zhu et al.(2009)
Sum1 		0.991 0.038
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G37860.1 AT hook 119 131
OBART02G37860.1 AT hook 180 192

Links

Other AT hook family TFs
Other Oryza barthii TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000639 Ricinus communis 27810.m000639 I
30170.m014115 Ricinus communis 30170.m014115 I
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I
BGIOSGA002846 Oryza indica BGIOSGA002846 I
BGIOSGA011963 Oryza indica BGIOSGA011963 I
Bo4g111040 Brassica oleracea Bo4g111040 I
Bo6g073020 Brassica oleracea Bo6g073020 I
Bo6g086320 Brassica oleracea Bo6g086320 I
Bo8g092010 Brassica oleracea Bo8g092010 I
Bo9g155940 Brassica oleracea Bo9g155940 I
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I
Bra002159 Brassica rapa Bra002159 I
Bra003752 Brassica rapa Bra003752 I
Bra007341 Brassica rapa Bra007341 I
Bra014617 Brassica rapa Bra014617 I
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I
Carubv10002425m.g Capsella rubella Carubv10002425m.g I
Carubv10017800m.g Capsella rubella Carubv10017800m.g I
cassava15495.m1 Manihot esculenta cassava15495.m1 I
cassava39243.m1 Manihot esculenta cassava39243.m1 I
cassava41240.m1 Manihot esculenta cassava41240.m1 I
Ca_07264 Cicer arietinum Ca_07264 I
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I
Cla012194 Citrullus lanatus Cla012194 I
Cla017778 Citrullus lanatus Cla017778 I
Cucsa.336890 Cucumis sativus Cucsa.336890 I
DREB2A Oryza sativa OS01G0165000 I
DREB2E Oryza sativa OS03G0174400 I
DREB2F Arabidopsis thaliana AT3G57600 D
DREB2G Arabidopsis thaliana AT5G18450 D
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I
GLYMA02G31350 Glycine max GLYMA02G31350 I
GLYMA03G29530 Glycine max GLYMA03G29530 I
GLYMA10G21850 Glycine max GLYMA10G21850 I
GLYMA14G32210 Glycine max GLYMA14G32210 I
GLYMA19G04461 Glycine max GLYMA19G04461 I
GLYMA19G32380 Glycine max GLYMA19G32380 I
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I
GRMZM2G376255 Zea mays GRMZM2G376255 I
GRMZM2G399098 Zea mays GRMZM2G399098 I
GRMZM2G419901 Zea mays GRMZM2G419901 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I
LPERR01G03760 Leersia perrieri LPERR01G03760 I
LPERR03G04860 Leersia perrieri LPERR03G04860 I
Lus10011319.g Linum usitatissimum Lus10011319.g I
Lus10012210.g Linum usitatissimum Lus10012210.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I
Lus10023633.g Linum usitatissimum Lus10023633.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I
MDP0000250927 Malus domestica MDP0000250927 I
MDP0000703626 Malus domestica MDP0000703626 I
MDP0000871361 Malus domestica MDP0000871361 I
mgf017629m Mimulus guttatus mgf017629m I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
MTR_7g092190 Medicago truncatula MTR_7g092190 I
OB01G13930 Oryza brachyantha OB01G13930 I
OBART01G04210 Oryza barthii OBART01G04210 I
OBART03G05550 Oryza barthii OBART03G05550 I
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I
OLONG_014228 Oryza longistaminata OLONG_014228 I
OMERI01G04110 Oryza meridionalis OMERI01G04110 I
OMERI03G05220 Oryza meridionalis OMERI03G05220 I
ONIVA01G04630 Oryza nivara ONIVA01G04630 I
ONIVA03G05350 Oryza nivara ONIVA03G05350 I
OPUNC01G03970 Oryza punctata OPUNC01G03970 I
OPUNC03G05230 Oryza punctata OPUNC03G05230 I
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I
PK07402.1 Cannabis sativa PK07402.1 D
PK08602.1 Cannabis sativa PK08602.1 D
Pm003634 Prunus mume Pm003634 I
Pm025865 Prunus mume Pm025865 I
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I
TCM_024756 Theobroma cacao TCM_024756 I
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I