Bra000434 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra000434 T018764_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000434.1-P B3 33 139

Links

Other B3 family TFs
Other Brassica rapa TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30032.m000462 Ricinus communis 30032.m000462 N 0.703
30068.m002615 Ricinus communis 30068.m002615 I 0.822
30076.m004471 Ricinus communis 30076.m004471 I 0.851
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.743
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.735
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.832
ARF31 Arabidopsis thaliana AT2G36080 N 0.703
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.733
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.802
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.822
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.812
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.762
Bo01079s020 Brassica oleracea Bo01079s020 N 0.703
Bo3g001110 Brassica oleracea Bo3g001110 N 0.792
Bo3g039420 Brassica oleracea Bo3g039420 N 0.970
Bo3g064320 Brassica oleracea Bo3g064320 N 0.713
Bo4g006900 Brassica oleracea Bo4g006900 N 0.951
Bo4g099000 Brassica oleracea Bo4g099000 N 0.812
Bo4g197410 Brassica oleracea Bo4g197410 I 0.910
Bo5g002790 Brassica oleracea Bo5g002790 N 0.812
Bo5g136360 Brassica oleracea Bo5g136360 N 0.703
Bo6g079210 Brassica oleracea Bo6g079210 N 0.842
Bo8g097490 Brassica oleracea Bo8g097490 N 0.842
Bo9g176470 Brassica oleracea Bo9g176470 N 0.703
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.733
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.812
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.703
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.951
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.812
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.703
Bra001411 Brassica rapa Bra001411 N 0.703
Bra003482 Brassica rapa Bra003482 N 0.822
Bra004501 Brassica rapa Bra004501 N 0.951
Bra007646 Brassica rapa Bra007646 N 0.842
Bra014415 Brassica rapa Bra014415 N 0.822
Bra017262 Brassica rapa Bra017262 N 0.703
Bra030497 Brassica rapa Bra030497 N 0.802
Bra033294 Brassica rapa Bra033294 N 0.792
Bra034828 Brassica rapa Bra034828 N 0.703
Bra040478 Brassica rapa Bra040478 I 0.930
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.792
BRADI3G32140 Brachypodium distachyon BRADI3G32140 N 0.713
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.812
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.951
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.812
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.703
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.822
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.743
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.743
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.822
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.802
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.951
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.703
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.832
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.812
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.812
Ca_00826 Cicer arietinum Ca_00826 N 0.713
Ca_01368 Cicer arietinum Ca_01368 I 0.822
Ca_25633 Cicer arietinum Ca_25633 I 0.703
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.851
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.727
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.851
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.851
Cla005055 Citrullus lanatus Cla005055 N 0.786
Cla006845 Citrullus lanatus Cla006845 I 0.812
Cla014858 Citrullus lanatus Cla014858 N 0.828
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.838
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.792
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.802
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.802
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.871
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.713
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.851
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.842
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.951
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.951
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.733
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.871
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.707
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.842
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.832
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.832
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.703
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.832
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.822
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.861
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.703
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.871
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.840
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.851
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.800
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.822
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.703
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.792
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.762
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.792
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.782
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.703
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.747
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.743
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.792
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.733
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.842
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.822
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.832
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.802
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.782
MDP0000128295 Malus domestica MDP0000128295 N 0.830
MDP0000138163 Malus domestica MDP0000138163 N 0.802
MDP0000288808 Malus domestica MDP0000288808 N 0.782
mgf018965m Mimulus guttatus mgf018965m N 0.707
mgf019085m Mimulus guttatus mgf019085m N 0.703
mgf023686m Mimulus guttatus mgf023686m I 0.713
mgf023769m Mimulus guttatus mgf023769m N 0.832
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.724
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.795
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.802
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.752
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.703
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.723
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.842
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.832
NGA1 Arabidopsis thaliana AT2G46870 N 0.951
NGA2 Arabidopsis thaliana AT3G61970 N 0.802
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.812
NGA3 Arabidopsis thaliana AT1G01030 N 0.822
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.822
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.707
OB02G35380 Oryza brachyantha OB02G35380 I 0.802
OB03G11610 Oryza brachyantha OB03G11610 N 0.832
OB10G24100 Oryza brachyantha OB10G24100 N 0.756
OBART02G28100 Oryza barthii OBART02G28100 N 0.802
OBART02G28110 Oryza barthii OBART02G28110 N 0.736
OBART03G01650 Oryza barthii OBART03G01650 N 0.822
OBART04G22880 Oryza barthii OBART04G22880 I 0.812
OBART10G17010 Oryza barthii OBART10G17010 N 0.762
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.802
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.822
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.812
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.762
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.702
OLONG_022770 Oryza longistaminata OLONG_022770 N 0.700
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.812
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.822
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.762
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.822
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.812
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.762
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.802
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.812
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.822
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.865
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.762
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.851
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.851
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.727
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.802
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.822
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.812
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.762
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.802
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.733
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.762
OS02G0683500 Oryza sativa OS02G0683500 N 0.802
OS03G0120900 Oryza sativa OS03G0120900 N 0.822
OS04G0581400 Oryza sativa OS04G0581400 I 0.812
OS10G0537100 Oryza sativa OS10G0537100 N 0.762
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.762
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.723
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.792
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.812
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.812
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.743
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.752
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.792
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.822
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.822
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.733
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.871
PK04952.1 Cannabis sativa PK04952.1 I 0.703
PK11025.1 Cannabis sativa PK11025.1 I 0.871
PK21157.1 Cannabis sativa PK21157.1 I 0.832
Pm024248 Prunus mume Pm024248 I 0.871
Pm028725 Prunus mume Pm028725 N 0.812
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.832
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.871
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.842
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.851
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.703
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.802
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.871
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.707
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.861
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.851
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.832
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.871
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.703
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.703
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.745
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.822
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.762
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.792
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.703
Si011823m.g Setaria italica Si011823m.g N 0.792
Si020241m.g Setaria italica Si020241m.g N 0.733
Si027632m.g Setaria italica Si027632m.g N 0.713
Si036864m.g Setaria italica Si036864m.g N 0.822
Si039972m.g Setaria italica Si039972m.g N 0.752
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.822
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.812
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.861
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.733
TCM_005014 Theobroma cacao TCM_005014 I 0.871
TCM_015590 Theobroma cacao TCM_015590 I 0.881
TCM_022729 Theobroma cacao TCM_022729 N 0.737
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.921
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.822
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.822
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.713
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.703
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.703
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.713
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.724
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.809
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.792
Traes_2DL_2D1980C7B Triticum aestivum Traes_2DL_2D1980C7B N 0.700
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.893
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.782
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.802
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.762
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.802
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.802
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.731
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.742
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.729
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.733
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.851
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.703
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.828